Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2388 118 2e-21 seq8961 105 1e-17 seq2136 105 1e-17 seq499 98.7 1e-15 >seq2388 Length=20594 Score = 118 bits (130), Expect = 2e-21 Identities = 214/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 12498 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 12499 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 12558 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 12559 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 12618 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 12619 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 12678 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 12679 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 12738 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 12739 AGATTGTAAGTCT 12751 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 13757 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 13816 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 13817 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 13876 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 13877 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 13910 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| |||||||| || || ||||| ||| | |||||||||| Sbjct 7895 GTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 7954 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 7955 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 8014 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| ||||| |||||||||||||||| |||| Sbjct 8015 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCCCAAACAGTT 8074 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 8075 TTGTATAAAGCT---TTGATATCTTCTGG 8100 >seq8961 Length=3088 Score = 105 bits (116), Expect = 1e-17 Identities = 211/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 2162 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 2163 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 2222 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 2223 ATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 2282 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 2283 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 2342 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 2343 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 2402 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 2403 AGATTGTAAGTCT 2415 >seq2136 Length=23250 Score = 105 bits (116), Expect = 1e-17 Identities = 211/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 8619 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 8618 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 8559 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 8558 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 8499 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 8498 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 8439 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 8438 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 8379 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 8378 AGATTGTAAGTCT 8366 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 7058 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 6999 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 6998 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 6939 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 6938 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 6905 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| |||||||||||||| ||||| ||| | |||||||||| Sbjct 13079 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 13020 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 13019 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 12960 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 12959 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 12900 Query 78928 TT--ATAAACTCGCTTA-ATATCTTCTGG 78953 || ||||| |||| ||||||||||| Sbjct 12899 TTGTATAAA---GCTTTGATATCTTCTGG 12874 >seq499 Length=68593 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| |||||||| ||||| | ||| ||| | |||||||||| Sbjct 9397 GTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGAG 9456 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 9457 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 9516 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 9517 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGTT 9576 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 9577 TTGTATAAAGCT---TTGATATCTTCTGG 9602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718160242649240