Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq668 145 7e-30 seq47 138 1e-27 >seq668 Length=57742 Score = 145 bits (160), Expect = 7e-30 Identities = 191/263 (73%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 38724 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 38665 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 38664 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 38605 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 38604 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 38545 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094 |||| ||| | | |||| |||||| |||| |||||| || |||||||| | Sbjct 38544 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 38485 Query 14095 -TTGTTTCAATAGCATTAAATAA 14116 | | | ||||||||||| || Sbjct 38484 CTCGAAT--ATAGCATTAAACAA 38464 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 |||||||| ||| || ||||||||| |||| | || || || |||||||| || ||| Sbjct 39345 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 39286 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || | || ||||| |||||||||||||| |||||| Sbjct 39285 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 39250 >seq47 Length=171977 Score = 138 bits (152), Expect = 1e-27 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 |||| || ||| |||||||| | |||||| || ||||||| | ||| | ||| || Sbjct 33727 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 33786 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||| | ||| ||||| | || ||||| |||| |||||| ||||||||||| || Sbjct 33787 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 33846 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 || |||||||| |||||||| || ||||| || || | ||||| ||||| || |||| | Sbjct 33847 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 33906 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 || | | |||| |||||| |||| |||||| || |||||||| | | Sbjct 33907 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAAT 33966 Query 14103 ATAGCATTAAATAA 14116 |||||||||||||| Sbjct 33967 ATAGCATTAAATAA 33980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479655495109400