Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq668 149 6e-31 >seq668 Length=57742 Score = 149 bits (164), Expect = 6e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 38724 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 38665 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | ||| ||||| || || ||||| |||| |||||| |||||||| || Sbjct 38664 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 38605 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 38604 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 38545 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 |||| ||| | | |||| |||||| |||| |||||| || |||||||| Sbjct 38544 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 38488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 |||||||| ||| || ||||||||| |||| | || || ||||||||||| || ||| Sbjct 39345 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 39286 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | || ||||| ||||||||||| || |||||| Sbjct 39285 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 39250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478516467285240