Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2388 113 6e-20 seq2136 107 3e-18 seq8961 102 1e-16 seq47 84.2 3e-11 >seq2388 Length=20594 Score = 113 bits (124), Expect = 6e-20 Identities = 118/154 (77%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 13757 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 13816 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 13817 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 13876 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 13877 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 13910 Score = 107 bits (118), Expect = 3e-18 Identities = 214/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 12498 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 12499 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 12557 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || ||| ||| ||||| | || || || |||| || | Sbjct 12558 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 12616 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 12617 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 12676 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 12677 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 12736 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 12737 TGAGATTGTAAGTCT 12751 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 13128 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 13187 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 13188 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 13246 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 13247 ACGATCATAAATAATTACTGAATTGAGTTT 13276 >seq2136 Length=23250 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 7058 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 6999 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 6998 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 6939 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 6938 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 6905 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 7986 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 7927 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 7926 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 7868 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 7867 ACGATCATAAATAATTACTGAATTGAGTTT 7838 Score = 95.1 bits (104), Expect = 2e-14 Identities = 211/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 8619 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 8618 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 8560 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || ||| ||| || || | || || || || | || | Sbjct 8559 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTT 8501 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 8500 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 8441 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 8440 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 8381 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 8380 TGAGATTGTAAGTCT 8366 >seq8961 Length=3088 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 2799 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 2858 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 2859 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 2917 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 2918 ACGATCATAAATAATTACTGAATTGAGTTT 2947 Score = 95.1 bits (104), Expect = 2e-14 Identities = 211/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 2162 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || ||||| || ||||| || || ||||| | || |||||||| | || Sbjct 2163 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 2221 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || ||| ||| || || | || || || || | || | Sbjct 2222 -AATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTT 2280 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 2281 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 2340 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 2341 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 2400 Query 72470 GTAGATTGTACGTCT 72484 |||||||| |||| Sbjct 2401 TGAGATTGTAAGTCT 2415 >seq47 Length=171977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| ||||| || || |||||||||||||||||| |||||||| || Sbjct 34042 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 34101 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || |||||||| || ||||| | ||||| | | || |||||| | ||| ||||| Sbjct 34102 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 34161 Query 42445 A 42445 | Sbjct 34162 A 34162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671037765699160