Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq47 104 2e-17 seq668 98.7 9e-16 >seq47 Length=171977 Score = 104 bits (114), Expect = 2e-17 Identities = 89/109 (82%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 34048 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 34107 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | |||||||| || |||||||| ||| |||| Sbjct 34108 AAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAA 34156 >seq668 Length=57742 Score = 98.7 bits (108), Expect = 9e-16 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 38401 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 38342 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | ||| |||| || |||||||| ||| |||| Sbjct 38341 AAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAA 38293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430918890837582