Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq696 105 2e-17 seq32 105 2e-17 seq1361 104 5e-17 seq3649 102 2e-16 seq5909 98.7 2e-15 seq1136 98.7 2e-15 seq8938 93.3 1e-13 seq668 89.7 1e-12 seq47 86.0 1e-11 >seq696 Length=56493 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 4011 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 3952 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 3951 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 3892 Query 104557 CATTTT 104562 ||| || Sbjct 3891 CATATT 3886 >seq32 Length=201840 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 46653 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 46712 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 46713 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 46772 Query 104557 CATTTT 104562 ||| || Sbjct 46773 CATATT 46778 >seq1361 Length=35035 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 30023 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 30082 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || ||||| |||||| Sbjct 30083 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGC 30142 Query 104558 AT 104559 || Sbjct 30143 AT 30144 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 29755 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 29814 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 29815 TCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 29874 Query 104558 AT 104559 || Sbjct 29875 AT 29876 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 30293 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 30352 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 30353 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 30412 Query 104557 CATTTTG 104563 ||| ||| Sbjct 30413 CATATTG 30419 >seq3649 Length=11525 Score = 102 bits (112), Expect = 2e-16 Identities = 180/271 (66%), Gaps = 41/271 (15%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | |||||| || |||||||| ||||| || Sbjct 8518 ATTCCACCGCGAAGACGAAGAACAAGATGGAGTGTAGACTCCTTCTGAATGTTATAATCC 8459 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT------------------ 104431 | ||||||| || ||||| || || |||||||||||||| Sbjct 8458 GCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCTAACAAAAAAGTCAAAAT 8399 Query 104432 ---------------------AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || | ||| |||||||| || || || || || |||||| Sbjct 8398 AAAGAATTAAGAAAACAAACCAGACGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGA 8339 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| ||||| || | ||||| | ||| ||| || || || ||||||||||| Sbjct 8338 ATCTTAGCTTTCACATTCTCAATAGTATC-CGAGGCTTCCACTTCCAGAGTAATAGTCTT 8280 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || |||||||| || ||||| || |||||| Sbjct 8279 TCCCGTAAGTGTCTTAACAAAAATTTGCATT 8249 >seq5909 Length=5756 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 4058 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 4117 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 4118 TCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 4177 Query 104558 AT 104559 || Sbjct 4178 AT 4179 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 4326 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 4385 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || || || |||||| Sbjct 4386 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAAATCTGC 4445 Query 104558 AT 104559 || Sbjct 4446 AT 4447 >seq1136 Length=40351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 26207 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 26266 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 26267 TCAGACGCTTCCACTTCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 26326 Query 104558 AT 104559 || Sbjct 26327 AT 26328 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 26475 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 26534 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || || || |||||| Sbjct 26535 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAAATCTGC 26594 Query 104558 AT 104559 || Sbjct 26595 AT 26596 >seq8938 Length=3098 Score = 93.3 bits (102), Expect = 1e-13 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || || || || || ||||||||||| ||||| ||||| || | || Sbjct 1619 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 1560 Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | ||| ||| || || || || ||||| |||||||| | ||||| ||||| || | Sbjct 1559 ATC-CGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTT 1501 Query 104556 GCATT 104560 ||||| Sbjct 1500 GCATT 1496 >seq668 Length=57742 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || ||||| | |||||||| ||||| || || ||||| ||||| Sbjct 38299 TCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 38358 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 38359 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 38400 >seq47 Length=171977 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || || || | |||||||| ||||| || || ||||| ||||| Sbjct 34150 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 34091 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 34090 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 34049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151220030037428