Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq583 91.5 2e-13 seq10130 82.4 9e-11 seq74 82.4 9e-11 >seq583 Length=62644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||||||||| || || ||||||| Sbjct 48144 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 48202 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || |||| ||||| |||| Sbjct 48203 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGGGTTAGTAATGAATAAC 48262 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 48263 TGGCTATATTGAAAGGAACGCCTAAACCC 48291 >seq10130 Length=2554 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||| | || ||| | || |||||||||||||||| || || ||||||| Sbjct 1253 TTGTGTTTTTAAAGCCTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 1195 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 1194 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 1135 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 1134 TGGCTATATTGAAAGGAACGCCTAAACCC 1106 >seq74 Length=149414 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||| ||||| || || ||||||| Sbjct 17033 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 17091 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 17092 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 17151 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 17152 TGGCTATATTGAAAGGAACGCCTAAACCC 17180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595781941395600