Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1361 109 5e-19 seq5909 104 2e-17 seq1136 104 2e-17 seq8938 89.7 5e-13 >seq1361 Length=35035 Score = 109 bits (120), Expect = 5e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 30017 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 30076 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || ||||| Sbjct 30077 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAA 30136 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 30137 ATCTGCATGC 30146 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 30288 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 30347 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 30348 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 30407 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 30408 ATCTGCAT 30415 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 29749 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 29808 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 29809 ATGGTATCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 29868 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 29869 ATCTGCAT 29876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 29482 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 29541 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 29542 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 29601 Query 95006 AT 95007 || Sbjct 29602 AT 29603 >seq5909 Length=5756 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 4320 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 4379 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || || || Sbjct 4380 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAA 4439 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 4440 ATCTGCATGC 4449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/129 (77%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA-AATTTTTGCCTTGACGGCGCC 94938 |||| |||||||| || ||||| ||||| ||||| | |||||||||||| || | Sbjct 4590 AATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCCTTGAATTTTTGCCTTCACATTTTC 4649 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || || |||| ||||| |||| ||||| ||||||||||||||||| || || || Sbjct 4650 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 4709 Query 94999 GATCTGCAT 95007 ||||||||| Sbjct 4710 GATCTGCAT 4718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 4052 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 4111 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 4112 ATGGTATCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 4171 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 4172 ATCTGCAT 4179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 3785 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 3844 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 3845 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 3904 Query 95006 AT 95007 || Sbjct 3905 AT 3906 >seq1136 Length=40351 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 26469 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 26528 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || || || Sbjct 26529 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAA 26588 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 26589 ATCTGCATGC 26598 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| || ||||| ||||| ||||| | |||||||||||| || || Sbjct 26740 AATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 26799 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 26800 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAG 26859 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 26860 ATCTGCAT 26867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 26201 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 26260 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 26261 ATGGTATCAGACGCTTCCACTTCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACAAAG 26320 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 26321 ATCTGCAT 26328 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 25934 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 25993 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 25994 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 26053 Query 95006 AT 95007 || Sbjct 26054 AT 26055 >seq8938 Length=3098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| || || ||||| | |||||| |||||||| | | ||| Sbjct 1889 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 1830 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || |||| || || || |||||||| |||||||| |||||||||||| Sbjct 1829 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 1770 Query 95006 AT 95007 || Sbjct 1769 AT 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448223446388760