Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq463 114 2e-21 seq2861 113 7e-21 seq7958 111 2e-20 seq2531 111 2e-20 seq628 111 2e-20 seq914 107 3e-19 seq7230 105 1e-18 seq270 105 1e-18 seq142 105 1e-18 >seq463 Length=71055 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| | | ||| | || ||||||||||||||||| |||||||| || | Sbjct 38516 CGCCAAGCGTCATCGAAAAGTCT-TGCGTGATAACATCCAAGGAATTACCAAGCCGGCAA 38574 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| |||| || | | || || |||| Sbjct 38575 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATCTCCGGGCTCATTTACGAGGAGA 38634 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 38635 CTCGAGGTGTTCTGAAAGTCTTCCT 38659 >seq2861 Length=16439 Score = 113 bits (124), Expect = 7e-21 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || |||||||||||||||||||||||||| || || Sbjct 8776 CGCAAAGCGTCACCGAAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCGGCAAT 8835 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 8836 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 8895 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | |||| |||| ||||||| | | || |||| ||| || Sbjct 8896 TCGAGGTGTTCTGAAAGTCTTCCTTGAAAATGTGATCCGTGACGC 8940 Score = 84.2 bits (92), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 ||| ||||| ||||| ||||||||||| ||||||| |||||||||| |||||||| || Sbjct 9000 CGAACACGCCAAACGAAAGACTGTCACAGCCATGGACGTCGTCTATGCGTTGAAACGCCA 9059 Query 16669 AGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||| |||| || ||||| Sbjct 9060 AGGACGTACTCTTTACGGATTTGG 9083 >seq7958 Length=3681 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | | || |||||||||||||||||||| ||||| || || Sbjct 3251 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 3192 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 3191 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 3132 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 3131 TCGAGGTGTTCTGAAAGTCTTCCT 3108 >seq2531 Length=19160 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | | | | | || |||||||||||||||||||| ||||| || || Sbjct 8642 CGCTAAGCGCCACAGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 8583 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || || | || || |||| Sbjct 8582 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTGATTTACGAGGAGAC 8523 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 8522 TCGAGGTGTTCTGAAAGTCTTCCT 8499 >seq628 Length=59936 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | | | | | || |||||||||||||||||||| ||||| || || Sbjct 15588 CGCTAAGCGCCACAGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 15647 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || || | || || |||| Sbjct 15648 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTGATTTACGAGGAGAC 15707 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 15708 TCGAGGTGTTCTGAAAGTCTTCCT 15731 >seq914 Length=47012 Score = 107 bits (118), Expect = 3e-19 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | | || |||||||||||||||||||| ||||| || || Sbjct 9310 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 9369 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| || ||||||||||| || ||| | || || | | || || |||| Sbjct 9370 CCGTCGATTGGCACGCCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 9429 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 9430 TCGAGGTGTTCTGAAAGTCTTCCT 9453 >seq7230 Length=4250 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | |||| || ||||||||||||||||||||||| || || | Sbjct 4162 CGCTAAGCGCCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACCAAACCGGCAA 4104 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 4103 TCCGGCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 4044 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 4043 CTCGAGGTGTTCTGAAAGTCTTCCT 4019 >seq270 Length=92503 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | |||| || ||||||||||||||||||||||| || || | Sbjct 10731 CGCTAAGCGCCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACCAAACCGGCAA 10673 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 10672 TCCGGCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 10613 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 10612 CTCGAGGTGTTCTGAAAGTCTTCCT 10588 >seq142 Length=117950 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||| ||||| || | Sbjct 62339 CGCGAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAA 62397 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 62398 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 62457 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 62458 CTCGAGGTGTTCTGAAAGTCTTCCT 62482 Score = 84.2 bits (92), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 ||| ||||| |||||||||||||| || ||||||| |||||||||| |||||||| || Sbjct 62564 CGAACACGCCAAACGTAAGACTGTTACAGCCATGGACGTCGTCTATGCGTTGAAACGCCA 62623 Query 16669 AGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||| |||| || ||||| Sbjct 62624 AGGACGTACTCTTTACGGATTTGG 62647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064145114063