Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2388 107 2e-18 seq2136 102 1e-16 seq8961 95.1 2e-14 seq499 95.1 2e-14 >seq2388 Length=20594 Score = 107 bits (118), Expect = 2e-18 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 12498 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 12499 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 12558 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 12559 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 12618 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 12619 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 12678 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 12679 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 12725 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 13757 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 13816 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 13817 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 13876 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 13877 CAACAGTTGTTACTCCAGTATAAATGCCT 13905 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| |||||||| || || ||||| ||| | | |||||||| Sbjct 7895 GTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 7954 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 7955 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 8014 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| ||||| |||||||||||||||| |||| Sbjct 8015 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCCCAAACAGTT 8074 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 8075 TTGTATAAAGCT---TTGATATCTTCTGG 8100 >seq2136 Length=23250 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 7058 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 6999 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 6998 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 6939 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 6938 CAACAGTTGTTACTCCAGTATAAATGCCT 6910 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 13079 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 13020 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 13019 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 12960 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 12959 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 12900 Query 62205 TT--ATAAACTCGCTTA-ATATCTTCTGG 62230 || ||||| |||| ||||||||||| Sbjct 12899 TTGTATAAA---GCTTTGATATCTTCTGG 12874 Score = 95.1 bits (104), Expect = 2e-14 Identities = 193/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 8619 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 8618 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 8559 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 8558 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 8499 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 8498 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 8439 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 8438 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 8392 >seq8961 Length=3088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 193/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 2162 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 2163 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 2222 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 2223 ATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 2282 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 2283 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 2342 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 2343 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 2389 >seq499 Length=68593 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| |||||||| ||||| | ||| ||| | | |||||||| Sbjct 9397 GTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGAG 9456 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 9457 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 9516 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 9517 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGTT 9576 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 9577 TTGTATAAAGCT---TTGATATCTTCTGG 9602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622853049317560