Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2388 116 5e-21 seq8961 104 3e-17 seq2136 104 3e-17 seq47 91.5 2e-13 seq499 89.7 7e-13 seq668 86.0 8e-12 >seq2388 Length=20594 Score = 116 bits (128), Expect = 5e-21 Identities = 198/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 12498 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 12499 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 12558 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 12559 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 12618 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 12619 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 12678 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 12679 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 12725 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 63813 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 63872 |||| | ||||| ||||||||||| |||||||| || || ||||| || || || | | Sbjct 13757 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 13816 Query 63873 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 63932 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 13817 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 13876 Query 63933 CTACCGTTGTTACACCATTATATATTCCT-TGGA 63965 | || |||||||| ||| |||| || ||| |||| Sbjct 13877 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 13910 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| |||||||| || || ||||| ||| | | |||||||| Sbjct 7895 GTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 7954 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 7955 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 8014 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | | | || | |||||||| || || |||||||||||||||| |||| Sbjct 8015 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCCCAAACAGTT 8074 Query 62060 T--TATAAA-CTCGCTTAATATCTTCTGG 62085 | |||||| || || ||||||||||| Sbjct 8075 TTGTATAAAGCT---TTGATATCTTCTGG 8100 >seq8961 Length=3088 Score = 104 bits (114), Expect = 3e-17 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 2162 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 2163 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 2222 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 2223 ATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 2282 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 2283 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 2342 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 2343 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 2389 >seq2136 Length=23250 Score = 104 bits (114), Expect = 3e-17 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 8619 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 8618 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 8559 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 8558 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 8499 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 8498 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 8439 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 8438 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 8392 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 13079 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 13020 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 13019 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 12960 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 12959 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 12900 Query 62060 TT--ATAAACTCGCTTA-ATATCTTCTGG 62085 || ||||| |||| ||||||||||| Sbjct 12899 TTGTATAAA---GCTTTGATATCTTCTGG 12874 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 63813 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 63872 |||| | ||||| ||||||||||| |||||||| || || ||||| || || || | | Sbjct 7058 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 6999 Query 63873 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 63932 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 6998 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 6939 Query 63933 CTACCGTTGTTACACCATTATATATTCCT-TGGA 63965 | || |||||||| ||| |||| || ||| |||| Sbjct 6938 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 6905 >seq47 Length=171977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 34042 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 34101 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||||||||| || || || | |||||| | || || |||||| | ||| ||||| Sbjct 34102 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 34161 >seq499 Length=68593 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| |||||||| ||||| | ||| ||| | | |||||||| Sbjct 9397 GTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGAG 9456 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 9457 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 9516 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 9517 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGTT 9576 Query 62060 T--TATAAA-CTCGCTTAATATCTTCTGG 62085 | |||||| || || ||||||||||| Sbjct 9577 TTGTATAAAGCT---TTGATATCTTCTGG 9602 >seq668 Length=57742 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 38407 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 38348 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||||||||| || || || | ||| || | || || |||||| | ||| ||||| Sbjct 38347 AATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 38288 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || || || || ||||| || || || | ||||||||||| | | ||| ||||| ||| Sbjct 38086 ACCTCCTCTACAGTCCAGAACGAAGCAACGGCCTTTTTATAAAATTGCCAAATGTCCTGA 38027 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 33271 |||| || |||||||||||||| | ||||||||||| | || | |||||| Sbjct 38026 TATTTGATCGGAAAAATAACAAAACGATTTGGATTTTCTCGCAGTAATGGTTC 37974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633536234443600