Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq362 96.9 3e-15 seq8938 87.8 2e-12 >seq362 Length=81727 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| |||||| | ||||| | |||||||| | || Sbjct 42584 AATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTC 42525 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| |||| || |||| ||| |||||||| || ||||||||||| | Sbjct 42524 GGATACTATTGAGAATGTGAAAGCTAAAATTCAG-GACAAAGAGGGTATTCCACCTGATC 42466 Query 25117 AACAGCG 25123 | ||||| Sbjct 42465 AGCAGCG 42459 >seq8938 Length=3098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| |||||| | ||||| | |||||||| | || Sbjct 1496 AATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTC 1555 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| |||| || || | ||| ||||| || || ||||||||||| | Sbjct 1556 GGATACTATTGAGAATGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATTCCACCTGATC 1614 Query 25117 AACAGCG 25123 | ||||| Sbjct 1615 AGCAGCG 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433264145192165