Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq668 109 6e-19 seq47 102 9e-17 >seq668 Length=57742 Score = 109 bits (120), Expect = 6e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| || || || || || ||||| || ||| Sbjct 38712 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 38653 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 38652 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 38593 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || || ||||| || | || |||||| |||| || ||||| Sbjct 38592 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACT 38533 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 || | |||| | ||||||||| ||||||||||| ||| || Sbjct 38532 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 38490 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| ||||| ||||||||||| ||||| | ||| || || |||||||| Sbjct 38400 ATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTGA 38341 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 ||||| || ||||| | |||||| | || || |||||||||| ||| Sbjct 38340 AATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAA 38294 >seq47 Length=171977 Score = 102 bits (112), Expect = 9e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || ||| | ||||| ||||| || || || ||||| || ||| | Sbjct 33736 CAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGT 33795 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || |||||||| |||||||| |||| ||||||||| ||||| || ||| Sbjct 33796 CCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAAT 33855 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT-GCT 93270 ||||| || || || ||||| || | | |||||| |||| || ||||| || Sbjct 33856 ATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCA 33915 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 | |||| | ||||||||| ||||||||||| ||| || Sbjct 33916 G-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 33954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556776637450840