Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8938 127 2e-24 seq362 127 2e-24 seq3649 100 2e-16 seq1361 87.8 2e-12 seq1136 87.8 2e-12 seq696 87.8 2e-12 seq32 87.8 2e-12 seq2388 86.0 5e-12 seq293 84.2 2e-11 seq2189 82.4 6e-11 >seq8938 Length=3098 Score = 127 bits (140), Expect = 2e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || |||||||| ||||||||||||||||| || | Sbjct 1497 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1556 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 1557 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 1616 Query 22339 CAACGTCT 22346 || ||||| Sbjct 1617 CAGCGTCT 1624 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || | ||||||||||| || | | Sbjct 1768 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 1827 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| |||||||| ||||| Sbjct 1828 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 1887 Query 22339 CAACG 22343 || || Sbjct 1888 CAGCG 1892 >seq362 Length=81727 Score = 127 bits (140), Expect = 2e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || |||||||| ||||||||||||||||| || | Sbjct 42583 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 42524 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||| ||||| |||||||||||||| ||||| Sbjct 42523 GATACTATTGAGAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 42464 Query 22339 CAACGTCT 22346 || ||||| Sbjct 42463 CAGCGTCT 42456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || || || || | ||||| ||||| || | | Sbjct 42315 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATAACTCTCGAAGTTGAGGCATCG 42256 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| ||||| |||||||| || || Sbjct 42255 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 42196 Query 22339 CAACGTCT--TATATTTGCC 22356 || ||||| | | |||||| Sbjct 42195 CAGCGTCTGGTTTGTTTGCC 42176 >seq3649 Length=11525 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || || || | ||||| ||||||||| || | Sbjct 8250 ATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTCG 8309 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 8310 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 8369 Query 22339 CAACGTCT 22346 || ||||| Sbjct 8370 CAGCGTCT 8377 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| || ||||| || ||||||||||||| || | | Sbjct 8789 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACTATCACTCTTGAAGTTGAGGCATCT 8848 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| |||||||| ||||| Sbjct 8849 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 8908 Query 22339 CAACG 22343 || || Sbjct 8909 CAGCG 8913 >seq1361 Length=35035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 30418 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 30359 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 30358 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 30299 Query 22336 CAACAACG 22343 || || || Sbjct 30298 CAGCAGCG 30291 >seq1136 Length=40351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 26870 AATATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 26811 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 26810 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCGCCTGAT 26751 Query 22336 CAACAACG 22343 || || || Sbjct 26750 CAGCAGCG 26743 >seq696 Length=56493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 3884 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 3943 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 3944 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 4003 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 4004 ATCAACAGCGT 4014 >seq32 Length=201840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 46780 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 46721 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 46720 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 46661 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 46660 ATCAACAGCGT 46650 >seq2388 Length=20594 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTC 129459 ||||| |||||| ||||||||||| ||| |||| |||||||| ||||| |||| Sbjct 9302 GCCAACTCGCAAGAAGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTT 9361 Query 129460 AACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAA 129519 ||| |||||||||||||||| | | || | ||||| || ||| | ||||||||| Sbjct 9362 AACTCTTTGGCCTGGTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAA 9421 Query 129520 CC 129521 || Sbjct 9422 CC 9423 >seq293 Length=88462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||| |||||| |||||||| || ||||||||||| || || | || |||||||| || Sbjct 66050 TAAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGG 65991 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || || | || || | || || |||||||| |||||||| ||||| || | Sbjct 65990 CGTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGG 65931 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 65930 ATCAACAGCGT 65920 >seq2189 Length=22760 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 5859 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 5918 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 5919 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 5978 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 5979 TCAACAGCGT 5988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419666149275415