Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9361 91.5 3e-13 seq4192 91.5 3e-13 seq3181 91.5 3e-13 seq95 91.5 3e-13 seq1136 86.0 1e-11 >seq9361 Length=2893 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| |||||||| | ||| || || || || ||||| || ||||||||||| ||| Sbjct 1938 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 1879 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || || || || Sbjct 1878 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 1819 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 1818 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 1759 Query 288469 TGCAT 288473 ||||| Sbjct 1758 TGCAT 1754 >seq4192 Length=9737 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||| || | ||| || || || || ||||| || ||||||||||| ||| Sbjct 991 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 1050 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || ||||| || Sbjct 1051 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 1110 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 1111 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 1170 Query 288469 TGCAT 288473 ||||| Sbjct 1171 TGCAT 1175 >seq3181 Length=14077 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||| || | ||| || || || || ||||| || ||||||||||| ||| Sbjct 6275 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6334 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || ||||| || Sbjct 6335 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 6394 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 6395 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 6454 Query 288469 TGCAT 288473 ||||| Sbjct 6455 TGCAT 6459 >seq95 Length=138503 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| |||||||| | ||| || || || || ||||| || ||||||||||| ||| Sbjct 6135 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6194 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || || || || Sbjct 6195 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 6254 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 6255 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 6314 Query 288469 TGCAT 288473 ||||| Sbjct 6315 TGCAT 6319 >seq1136 Length=40351 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||| ||||| || || || || ||||| || || | ||| || ||| Sbjct 26219 GGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTATCAGACGCTTCC 26278 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || || || ||||| || || |||||||| Sbjct 26279 ACTTCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGCAT 26328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179471652732698