Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq8938 91.5 1e-13 seq3649 91.5 1e-13 seq362 87.8 2e-12 >seq8938 Length=3098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | | Sbjct 1344 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 1285 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| || Sbjct 1284 GTATCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 1225 Query 64439 TGCAtttt 64446 ||||| || Sbjct 1224 TGCATATT 1217 >seq3649 Length=11525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | | Sbjct 8097 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 8038 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || ||| ||| || ||||| | ||| | |||||| || ||||| ||||||||||| || Sbjct 8037 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATC 7978 Query 64439 TGCAtttt 64446 ||||| || Sbjct 7977 TGCATATT 7970 >seq362 Length=81727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 42188 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 42246 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || ||||| | ||||| |||||||| ||||| || || ||||| Sbjct 42247 AATCGTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAA 42306 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 42307 AATTTGCATT 42316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || |||||||| || || ||||| || ||||| || || ||||| ||||| ||| ||| Sbjct 42456 AGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTA-GCTTTCACATTCTC 42514 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| ||| |||||||| | ||| | || || || ||||||||||| || || Sbjct 42515 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 42574 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 42575 AATTTGCATT 42584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499569284934040