Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9361 100 3e-16 seq5909 100 3e-16 seq4192 100 3e-16 seq3181 100 3e-16 seq107 100 3e-16 seq95 100 3e-16 seq1361 93.3 4e-14 seq1136 93.3 4e-14 >seq9361 Length=2893 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| ||| ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 1938 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 1879 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 1878 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 1819 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 1818 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 1760 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 1759 TTGCATGGC 1751 >seq5909 Length=5756 Score = 100 bits (110), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| || || ||||| ||||||||| ||| ||| || ||| | | || Sbjct 4589 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCCTTGAATTTTTGCCTTCACATTTT 4648 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| ||||| | Sbjct 4649 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 4708 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 4709 AGATCTGCAT 4718 >seq4192 Length=9737 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 991 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 1050 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 1051 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 1110 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 1111 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 1169 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 1170 TTGCATGGC 1178 >seq3181 Length=14077 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 6275 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6334 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 6335 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 6394 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 6395 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 6453 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 6454 TTGCATGGC 6462 >seq107 Length=131503 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | ||| || || ||| |||| | Sbjct 116387 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 116328 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 116327 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 116268 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 116267 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 116209 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 116208 TTGCATGGC 116200 >seq95 Length=138503 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| ||| ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 6135 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6194 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 6195 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 6254 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 6255 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 6313 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 6314 TTGCATGGC 6322 >seq1361 Length=35035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 30287 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 30345 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 30346 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 30405 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 30406 AGATCTGCAT 30415 >seq1136 Length=40351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| || || ||||| ||||||| | ||| ||| || ||| | | || Sbjct 26739 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 26797 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| ||||| | Sbjct 26798 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 26857 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 26858 AGATCTGCAT 26867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475428933997840