Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1136 107 2e-18 seq5909 100 3e-16 seq1361 98.7 9e-16 seq696 98.7 9e-16 seq32 98.7 9e-16 seq8961 89.7 5e-13 seq2388 89.7 5e-13 seq2136 89.7 5e-13 seq2189 86.0 6e-12 seq402 86.0 6e-12 seq293 86.0 6e-12 seq362 82.4 7e-11 >seq1136 Length=40351 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || |||||||||||||| || |||||||||||| || | ||| Sbjct 26739 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 26798 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||||||||| ||||| | |||||| || || ||||| ||||| || Sbjct 26799 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 26858 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 26859 GATCTGCAT 26867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||||||||| || || ||||| ||||| ||||||||||| || |||| ||| Sbjct 26468 CAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 26527 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| |||| || |||||||| || | || || || || ||||| || || || Sbjct 26528 GATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAA 26587 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 26588 AATCTGCAT 26596 >seq5909 Length=5756 Score = 100 bits (110), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC-TTGAATTTTTTGTTTGATCGCTT 45270 |||||| ||||| || |||||||||||||| || || |||||||||| || | || Sbjct 4589 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCCTTGAATTTTTGCCTTCACATTTT 4648 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||| || |||| ||||||||| ||||| | |||||| || || ||||| ||||| | Sbjct 4649 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 4708 Query 45331 AAATTTGCAT 45340 | || ||||| Sbjct 4709 AGATCTGCAT 4718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||||||||| || || ||||| ||||| ||||||||||| || |||| ||| Sbjct 4319 CAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 4378 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| |||| || |||||||| || | || || || || ||||| || || || Sbjct 4379 GATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAA 4438 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 4439 AATCTGCAT 4447 >seq1361 Length=35035 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || || ||||||||||| || |||||||||||| || | ||| Sbjct 30287 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 30346 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||||||||| ||||| | |||||| || || ||||| || || || Sbjct 30347 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAA 30406 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 30407 GATCTGCAT 30415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||||||||| || || ||||| ||||| ||||||||||| || |||| ||| Sbjct 30016 CAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 30075 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| |||| || |||||||| || | || || || || ||||| || ||||| Sbjct 30076 GATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAA 30135 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 30136 AATCTGCAT 30144 >seq696 Length=56493 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| || || |||||||||||||||||| || | || Sbjct 4017 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 3958 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||| || |||||||||| ||||| ||||| ||||| |||||||| Sbjct 3957 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 3898 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 3897 AATCTGCAT 3889 >seq32 Length=201840 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| || || |||||||||||||||||| || | || Sbjct 46647 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 46706 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||| || |||||||||| ||||| ||||| ||||| |||||||| Sbjct 46707 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 46766 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 46767 AATCTGCAT 46775 >seq8961 Length=3088 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||||||||| || || || || ||| | || Sbjct 242 CAAATAGAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAAC 183 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | Sbjct 182 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACT 123 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 | | || |||| | || || ||||||||||||| |||||| Sbjct 122 TCTCCTGAAGAAGTTTCTGTTTGCAATTTGGCTTCGA-TTGCGT 80 >seq2388 Length=20594 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||| ||||| || || || || ||| | || Sbjct 10689 CAAATAGAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAAC 10630 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | | Sbjct 10629 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATA-C 10571 Query 123720 GATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 ||| || |||| | || |||||||||||||||| |||||| Sbjct 10570 TTCGCCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGA-TTGCGT 10527 >seq2136 Length=23250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||||||||| || || || || ||| | || Sbjct 10423 CAAATAGAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAAC 10482 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | Sbjct 10483 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACT 10542 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 | | || |||| | || || ||||||||||||| |||||| Sbjct 10543 TCTCCTGAAGAAGTTTCTGTTTGCAATTTGGCTTCGA-TTGCGT 10585 >seq2189 Length=22760 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 5991 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 5932 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | ||| ||||| || |||| || || ||||||| ||| || ||||| Sbjct 5931 AATCGTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAA 5872 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 5871 AATCTGCATC 5862 >seq402 Length=77955 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 26394 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 26335 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | |||||||| | ||| ||||| || |||| || || ||||| | ||| || ||||| Sbjct 26334 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAA 26275 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 26274 AATCTGCATC 26265 >seq293 Length=88462 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 65917 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 65976 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | ||| ||||| || |||| || || ||||||| ||| || ||||| Sbjct 65977 AATCGTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAA 66036 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 66037 AATCTGCATC 66046 >seq362 Length=81727 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||| || ||||| || ||||| ||||||||||| ||||| ||| | Sbjct 42191 CGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATC 42250 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||| ||||||||||| | || ||||| || | || || || |||||| Sbjct 42251 GTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATT 42310 Query 45336 TGCAT 45340 ||||| Sbjct 42311 TGCAT 42315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451934885366360