Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq107 123 6e-23 seq4192 120 7e-22 seq3181 120 7e-22 seq9361 114 3e-20 seq95 114 3e-20 seq5909 86.0 1e-11 seq1361 86.0 1e-11 seq1136 86.0 1e-11 >seq107 Length=131503 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| |||||| || |||||||||||||| ||| Sbjct 116381 TTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTGC 116322 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || |||| |||||| Sbjct 116321 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCC 116262 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 116261 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 116206 >seq4192 Length=9737 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 997 TTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 1056 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 1057 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 1116 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 1117 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 1172 >seq3181 Length=14077 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 6281 TTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 6340 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 6341 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 6400 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 6401 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 6456 >seq9361 Length=2893 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 1932 TTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 1873 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || |||| |||||| Sbjct 1872 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCC 1813 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 1812 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 1757 >seq95 Length=138503 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 6141 TTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 6200 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || |||| |||||| Sbjct 6201 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCC 6260 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 6261 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 6316 >seq5909 Length=5756 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 4005 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 3946 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 3945 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 3914 >seq1361 Length=35035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 29702 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 29643 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 29642 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 29611 >seq1136 Length=40351 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 26154 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 26095 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 26094 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 26063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178738966255097