Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9361 82.4 9e-11 seq8938 82.4 9e-11 seq3649 82.4 9e-11 seq362 82.4 9e-11 seq107 82.4 9e-11 seq95 82.4 9e-11 >seq9361 Length=2893 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 || ||||||||||||| | || || | || || | ||||| || ||||| || | Sbjct 1938 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 1879 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 || ||||| || | || | | |||||| ||| |||||| ||||| || | | Sbjct 1878 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 1819 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| | |||||||||| ||||| || || || || |||||||| ||||||| | Sbjct 1818 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 1759 Query 46589 TGCAT 46593 ||||| Sbjct 1758 TGCAT 1754 >seq8938 Length=3098 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 1484 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 1425 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 1424 GTCCTCGAGCTGCTTACCGGCAAAGATC 1397 >seq3649 Length=11525 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 8237 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 8178 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 8177 GTCCTCGAGCTGCTTACCGGCAAAGATC 8150 >seq362 Length=81727 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 42596 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 42655 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 42656 GTCCTCGAGCTGCTTCCCGGCAAAGATC 42683 >seq107 Length=131503 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 || ||||||||||| | | || || | || || | |||||| || ||||| || | Sbjct 116387 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 116328 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 || ||||| || | || | | |||||| ||| |||||| ||||| || | | Sbjct 116327 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 116268 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| | |||||||||| ||||| || || || || |||||||| ||||||| | Sbjct 116267 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 116208 Query 46589 TGCAT 46593 ||||| Sbjct 116207 TGCAT 116203 >seq95 Length=138503 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 || ||||||||||||| | || || | || || | ||||| || ||||| || | Sbjct 6135 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 6194 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 || ||||| || | || | | |||||| ||| |||||| ||||| || | | Sbjct 6195 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 6254 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| | |||||||||| ||||| || || || || |||||||| ||||||| | Sbjct 6255 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 6314 Query 46589 TGCAT 46593 ||||| Sbjct 6315 TGCAT 6319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565152971281320