Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq668 118 1e-21 seq47 114 2e-20 seq1291 87.8 2e-12 >seq668 Length=57742 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 38705 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 38646 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 38645 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 38586 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 38585 CCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA 38548 >seq47 Length=171977 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 33739 GCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCA 33798 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 33799 GGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 33858 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 33859 CCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA 33896 >seq1291 Length=36672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 27392 CGTTTTTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGT 27333 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| |||||| | || | ||||| | |||||||| || |||||||||| ||| Sbjct 27332 GCCATTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAAT 27273 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || || || || ||||| | ||| || || | ||| ||| || Sbjct 27272 TCTGAGCCAGAAACAGTG-ATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAG 27214 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | ||| || || || || |||| ||||| |||||| || || Sbjct 27213 CAAAGTTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 27172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588886983639800