Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq481 98.7 1e-15 seq1291 86.0 7e-12 >seq481 Length=69973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 ||||||| ||||| ||||||||||| || | ||| || ||| || | || || || Sbjct 27336 TTTCCCAATAGCATCGATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCAT 27395 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 |||||| | ||| | || | | || ||| ||||||||||||||||| | || | || Sbjct 27396 TTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 27455 Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | | |||| | |||||| || ||||||| || || || | ||| |||||| | || Sbjct 27456 GCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAG 27514 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | || || || ||||| ||| | ||| || |||||| Sbjct 27515 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACCC 27552 >seq1291 Length=36672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 ||||||| ||||||||||||||||| || | ||| || ||| || | || || || Sbjct 27387 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 27328 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 ||| || | ||| | || | | || ||| ||||||||||||||||| | || | || Sbjct 27327 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 27268 Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | | |||| | ||| || || ||||| | || || ||| | ||| || || | || Sbjct 27267 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 27209 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | || || || ||||| ||| | ||| || |||||| Sbjct 27208 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACCC 27171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589891631776840