Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq323 87.8 2e-12 seq4509 84.2 3e-11 seq764 84.2 3e-11 >seq323 Length=85190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 54482 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 54423 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 54422 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 54366 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||||||| | || || |||| Sbjct 54365 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 54306 Query 183048 ATGAAGCT 183055 ||| || Sbjct 54305 TGGAAACT 54298 >seq4509 Length=8657 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 8457 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 8516 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 8517 TGGGACATAGAATCAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 8573 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||| ||| | || || |||| Sbjct 8574 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATTTACCGCAATCGT 8633 Query 183048 ATGAAGCT 183055 ||| || Sbjct 8634 TGGAAACT 8641 >seq764 Length=53643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 37063 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 37122 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 37123 TGGGACATAGAATCAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 37179 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||| ||| | || || |||| Sbjct 37180 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATTTACCGCAATCGT 37239 Query 183048 ATGAAGCT 183055 ||| || Sbjct 37240 TGGAAACT 37247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658303690586360