Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq668 129 7e-25 seq47 105 8e-18 seq2136 96.9 4e-15 seq499 96.9 4e-15 seq2388 93.3 5e-14 >seq668 Length=57742 Score = 129 bits (142), Expect = 7e-25 Identities = 280/422 (66%), Gaps = 38/422 (9%) Strand=Plus/Minus Query 18945 ATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||||| || | ||||| |||||||| | ||| ||||| || || | | || ||||| Sbjct 38724 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 38665 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 |||| ||| | |||||||| | || | ||| |||| ||| || || | |||||| Sbjct 38664 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 38605 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 |||||| ||||||||||| || ||||| |||||||||| || | ||| ||| | Sbjct 38604 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 38545 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTA---------- 19174 ||| || ||| || | |||| || ||||||||||| || || || | Sbjct 38544 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 38485 Query 19175 ----CACATGGCATT----GTCT-----CTAT----AGAAT----------TAAATAGAT 19207 | || ||||| || |||| | ||| |||| | Sbjct 38484 CTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAAGAAGG 38425 Query 19208 ACATA-CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | ||| || ||| | |||||||| ||| | ||| || ||| |||||||||||| Sbjct 38424 AAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAA 38365 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||||||||| ||||| || |||||||| |||||||| | ||||||| ||| || ||| Sbjct 38364 TGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACT 38305 Query 19327 TC 19328 || Sbjct 38304 TC 38303 >seq47 Length=171977 Score = 105 bits (116), Expect = 8e-18 Identities = 266/412 (65%), Gaps = 43/412 (10%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| |||||||| | ||| ||||| || |||| | || ||||||||| ||| | Sbjct 33735 ACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAG 33794 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || | ||| |||| ||| || || | |||||| |||||| ||||| Sbjct 33795 TCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 33854 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 |||||| || || || |||||||||| || | ||| ||| | ||| || ||| || Sbjct 33855 TATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGC 33914 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTA--------------CACATGGCATT 19185 | |||| || ||||||||||| || || || | | || ||||| Sbjct 33915 AGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATAGCATT 33974 Query 19186 GTCT---------CTATAGAA-------------------TTAAATAGATACATA-CGCT 19216 | |||| || ||||| | | ||| || | Sbjct 33975 AAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAATTTAAAGAAGGAAATACCGTT 34034 Query 19217 CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTT 19276 || | |||||||| ||| | ||| || ||| |||||||||||||||||||||| Sbjct 34035 CAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTT 34094 Query 19277 CTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 | ||||| || |||||||| |||||||| | || |||| ||| || ||||| Sbjct 34095 CAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTC 34146 >seq2136 Length=23250 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 ||| || ||||||||||| || || || | ||| ||| || |||||||||| Sbjct 13080 TGTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGA 13021 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || | ||| | ||| | || || | |||||| | ||| | ||||||||| || || || Sbjct 13020 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 12961 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 ||| | | ||| |||| ||||||| | | ||| | | |||||| || ||||| || || Sbjct 12960 AAAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGT 12901 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGA---GATTAGTATTTTGAATAGATCCTCC 47245 ||| || | ||| || |||||||| | | | ||||||| | ||| ||||| Sbjct 12900 TTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCC 12844 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 || |||||| |||||||| || || | ||| | ||| ||||| ||| || || || || Sbjct 12377 AACTTGAAAATCTCCAGAAAGAACACGACGACAATAAATATTCGATGTGTAAGGCTCAAT 12318 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 |||||| || || |||| |||||| || ||||| ||||||||||| | |||| ||| || Sbjct 12317 AGATTCGTTGTTACCAAGAATTTGTGCTGTTGAAGCTGTAGGCATTGGAGCAATTAACAA 12258 Query 47444 GCTATTTCTTACTCCATAT 47462 || || | || ||| || Sbjct 12257 ACTGTTGCGGACACCAAAT 12239 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 47525 ATCATATTGAAGAATTCCTTTACTTATC-GGAGAACCATTATATGTTTTATAAGGACCGT 47583 |||| | || | ||||||||| || | | |||||||| ||||| || | ||| || || Sbjct 11815 ATCAAACTGCAAAATTCCTTT-CTCAACAGGAGAACCTTTATAAGTCTCATATGGTCCAA 11757 Query 47584 ATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTT 47643 || | | || | ||||||| ||||||||||||| |||||| ||||||||||| |||| Sbjct 11756 ATTGCTCTGCCAATTCACAAGAAGCTTCCAATGCACCATAATAGATTGTTTCAAAAATTT 11697 Query 47644 TTATGTTTA 47652 | |||||| Sbjct 11696 GTTTGTTTA 11688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 48919 TAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAG 48978 |||| | ||||| |||||||| || ||||| || | || ||||| ||||| | | || Sbjct 7058 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 6999 Query 48979 CATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATT 49038 |||||||||| |||| ||| ||| || | || | ||| || || || |||| |||| Sbjct 6998 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 6939 Query 49039 CTTTAGTAGTTACACCTGTATATATTCCT 49067 | ||| ||||| || ||||| || ||| Sbjct 6938 CAACAGTTGTTACTCCAGTATAAATGCCT 6910 >seq499 Length=68593 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 ||| || ||||||||||| || || || ||||| ||| || |||||||||| Sbjct 9396 TGTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGA 9455 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || | ||| | ||| | || || | |||||| | ||| | ||||||||| || || || Sbjct 9456 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 9515 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 ||| | | ||| |||| ||||||| | | || | | |||||| || ||||| || || Sbjct 9516 AAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGT 9575 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGA---GATTAGTATTTTGAATAGATCCTCC 47245 ||| || | ||| || |||||||| | | | ||||||| | ||| ||||| Sbjct 9576 TTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCC 9632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 || |||||| || ||||| || |||| ||| | ||| ||||| ||| || || || || Sbjct 10068 AACTTGAAACTCGCCAGAAAGAACTCGACGACAATAAATATTCGATGTGTAAGGCTCGAT 10127 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 |||||| || ||||||| |||||| || ||||| ||||||||||| | |||| ||| Sbjct 10128 AGATTCGTTGTTTCCAAGAATTTGTGCTGTTGAAGCTGTAGGCATTGGAGCAATTAA 10184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/160 (75%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 47525 ATCATATTGAAGAATTCCTTTACTTATC-GGAGAACCATTATATGTTTTATAAGGACCGT 47583 |||| | || | ||||||||| || | | |||||||| ||||| || | ||| || || Sbjct 10711 ATCAAACTGCAAAATTCCTTT-CTCAACTGGAGAACCTTTATAAGTCTCATATGGCCCAA 10769 Query 47584 ATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTT 47643 || | | ||| | |||||| ||||||||||| | |||||| ||||||||||| |||| Sbjct 10770 ATTGCTCAGCCAACTCACAAGAAGCTTCCAATGCGCCATAATAGATTGTTTCAAAAATTT 10829 Query 47644 TTATGTTTAGATTCCTTGCTTCTGAT-GATT-CAAAAGGA 47681 | |||||| | || ||| | |||| | || |||||||| Sbjct 10830 GTTTGTTTA-ACTCTTTGGCT-TGATCGCTTACAAAAGGA 10867 >seq2388 Length=20594 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 ||| || ||||||||||| || ||||| | ||| ||| || |||||||||| Sbjct 7894 TGTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGA 7953 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || | ||| | ||| | || || | |||||| | ||| | ||||||||| || || || Sbjct 7954 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 8013 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 ||| | | ||| |||| ||||||| | | || | | ||||| || ||||| || || Sbjct 8014 AAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCCCAAACAGT 8073 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGA---GATTAGTATTTTGAATAGATCCTCC 47245 ||| || | ||| || |||||||| | | | ||||||| | ||| ||||| Sbjct 8074 TTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCC 8130 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 48919 TAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAG 48978 |||| | ||||| |||||||| || ||||| || | || ||||| ||||| | | || Sbjct 13757 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 13816 Query 48979 CATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATT 49038 |||||||||| |||| ||| ||| || | || || ||| || || || |||| |||| Sbjct 13817 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 13876 Query 49039 CTTTAGTAGTTACACCTGTATATATTCCT 49067 | ||| ||||| || ||||| || ||| Sbjct 13877 CAACAGTTGTTACTCCAGTATAAATGCCT 13905 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 || |||||| || ||||| || |||| ||| | ||| ||||| ||| || || || || Sbjct 8605 AACTTGAAAATCGCCAGAAAGAACTCGACGACAATAAATATTCGATGTGTAAGGCTCAAT 8664 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 ||| || || || |||| |||||| || ||||| ||||||||||| | |||| ||| Sbjct 8665 AGACTCGTTGTTACCAAGAATTTGTGCTGTTGAAGCTGTAGGCATTGGAGCAATTAA 8721 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 47525 ATCATATTGAAGAATTCCTTTACTTATC-GGAGAACCATTATATGTTTTATAAGGACCGT 47583 |||| | || | ||| ||||| || | | |||||||| ||||| || | ||| || || Sbjct 9235 ATCAAACTGCAAAATGCCTTT-CTCAACAGGAGAACCTTTATAAGTCTCATATGGTCCAA 9293 Query 47584 ATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTT 47643 || | | ||| | || ||| ||||||||||||| |||||||||||||||||| |||| Sbjct 9294 ATTGCTCAGCCAACTCGCAAGAAGCTTCCAATGCACCATAATATATTGTTTCAAAAATTT 9353 Query 47644 TTATGTTTA 47652 | |||||| Sbjct 9354 GTTTGTTTA 9362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562023844281240