Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq668 138 1e-27 seq47 113 5e-20 seq323 91.5 2e-13 seq353 89.7 6e-13 >seq668 Length=57742 Score = 138 bits (152), Expect = 1e-27 Identities = 320/480 (67%), Gaps = 48/480 (10%) Strand=Plus/Minus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| || Sbjct 38777 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 38718 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | |||||||| | | || ||||||||| Sbjct 38717 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 38658 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| |||| Sbjct 38657 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 38598 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || ||||| ||||| |||||||| ||||| || | ||||||| ||| || |||| Sbjct 38597 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA---TGAAGCT 38541 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT--- 37399 || || | || | |||| | |||||| || ||| || | | | |||| Sbjct 38540 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTC 38482 Query 37400 ---TGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttt--tCT---------- 37433 | | || || ||| || |||| | ||| |||||| ||| Sbjct 38481 GAATATAGCATTAAACAACTTTGAACTATTAAAA-AAATTTTTTTAATCTAAAGAAGGAA 38423 Query 37434 -------TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483 ||| | |||| | |||||||||||||||| | ||||||||| || || Sbjct 38422 ATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATG 38363 Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 ||||||||||||||| || ||||| ||||||||||| | |||||| | || |||||| || Sbjct 38362 AATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 38303 >seq47 Length=171977 Score = 113 bits (124), Expect = 5e-20 Identities = 312/484 (64%), Gaps = 51/484 (11%) Strand=Plus/Plus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| | Sbjct 33667 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGCTGG 33726 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | || ||| |||||||| | ||| | |||||||||| | || ||||||||| Sbjct 33727 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 33786 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| |||| | ||| || | |||||| ||||| |||||| |||| Sbjct 33787 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 33846 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || ||||| ||||| ||||| || ||||| || | |||||| ||| || |||| Sbjct 33847 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 33903 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA------CACATTC 37396 || || | || | |||| | |||||| || ||| || | || |||| Sbjct 33904 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 33962 Query 37397 AATTGT----TTCAATTGCTTT-------TAAGAGAAAGtttttttCTTCACT------- 37438 | | | || ||| |||| ||| | ||| | ||||| || | | Sbjct 33963 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAATTTAAAGAA 34022 Query 37439 -------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479 |||| | |||||||||||||||| | ||||||||| | Sbjct 34023 GGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 34082 Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAA 37539 | ||||||||||||||||| || ||||| ||||||||||| | ||| || | || ||||| Sbjct 34083 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAA 34142 Query 37540 CATC 37543 | || Sbjct 34143 CTTC 34146 >seq323 Length=85190 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 15382 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 15441 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391 |||||||| |||| ||||| |||| |||||||| || || Sbjct 15442 TGGATTGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 15481 >seq353 Length=82450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 77185 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 77244 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| |||| |||| |||| |||||||| || || ||| | ||| ||| | Sbjct 77245 TGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 77304 Query 153412 GTATAGCTAATGAACTAACTAAAATAttt 153440 | ||||| ||| | | ||||| ||| Sbjct 77305 GCCTAGCTTGGGAATTTAACAAAATTTTT 77333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592227278719640