Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2189 120 2e-22 seq293 120 2e-22 seq1136 116 3e-21 seq5909 109 4e-19 seq1361 107 2e-18 seq696 107 2e-18 seq402 107 2e-18 seq362 107 2e-18 seq32 107 2e-18 seq3649 104 2e-17 seq8938 98.7 8e-16 >seq2189 Length=22760 Score = 120 bits (132), Expect = 2e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||||||||| || ||||||||||| || || ||| |||| Sbjct 5991 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 5932 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||||| || |||||||| || | || || ||||||||||| || ||||| Sbjct 5931 AATCGTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAA 5872 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 5871 AATCTGCAT 5863 >seq293 Length=88462 Score = 120 bits (132), Expect = 2e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||||||||| || ||||||||||| || || ||| |||| Sbjct 65917 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 65976 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||||| || |||||||| || | || || ||||||||||| || ||||| Sbjct 65977 AATCGTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAA 66036 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 66037 AATCTGCAT 66045 >seq1136 Length=40351 Score = 116 bits (128), Expect = 3e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| ||||| |||||||||||||| || |||||||||||| || ||| |||| Sbjct 26739 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 26798 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | || ||||||||||||| |||||| || || | ||| ||||| || Sbjct 26799 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 26858 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 26859 GATCTGCAT 26867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| ||||| || ||||| ||||| ||||||||||| || || || |||| Sbjct 25927 CAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 25986 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||||||| | ||| ||||| || |||| || || || || |||||||| || || Sbjct 25987 GATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAA 26046 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 26047 GATTTGCAT 26055 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101335 AAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTAC 101394 ||| | ||| || || ||||| || ||||| ||||| ||||||||||| || || || Sbjct 26462 AAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGAC 26521 Query 101395 AATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT 101454 |||| | ||||||||| | ||| ||||| || |||| || || || || | ||| || Sbjct 26522 GTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTT 26581 Query 101455 TACAAATATCTGCATG 101470 || || ||||||||| Sbjct 26582 AACGAAAATCTGCATG 26597 >seq5909 Length=5756 Score = 109 bits (120), Expect = 4e-19 Identities = 103/130 (79%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC-TTGAATTTTTTGTTTTACAATTT 101399 ||| ||||| ||||| |||||||||||||| || || |||||||||| || ||| ||| Sbjct 4589 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCCTTGAATTTTTGCCTTCACATTTT 4648 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | || ||||| | || ||||||||||||| |||||| || || | ||| ||||| | Sbjct 4649 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 4708 Query 101460 ATATCTGCAT 101469 | |||||||| Sbjct 4709 AGATCTGCAT 4718 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| ||||| || ||||| ||||| ||||||||||| || || || |||| Sbjct 3778 CAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 3837 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||||||| | ||| ||||| || |||| || || || || |||||||| || || Sbjct 3838 GATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAA 3897 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 3898 GATTTGCAT 3906 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101335 AAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTAC 101394 ||| | ||| || || ||||| || ||||| ||||| ||||||||||| || || || Sbjct 4313 AAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGAC 4372 Query 101395 AATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT 101454 |||| | ||||||||| | ||| ||||| || |||| || || || || | ||| || Sbjct 4373 GTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTT 4432 Query 101455 TACAAATATCTGCATG 101470 || || ||||||||| Sbjct 4433 AACGAAAATCTGCATG 4448 >seq1361 Length=35035 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| ||||| || ||||||||||| || |||||||||||| || ||| |||| Sbjct 30287 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 30346 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | || ||||||||||||| |||||| || || | ||| || || || Sbjct 30347 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAA 30406 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 30407 GATCTGCAT 30415 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| ||||| || ||||| ||||| ||||||||||| || || || |||| Sbjct 29475 CAGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 29534 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||||||| | ||| ||||| || |||| || || || || |||||||| || || Sbjct 29535 GATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAA 29594 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 29595 GATTTGCAT 29603 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101335 AAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTAC 101394 ||| | ||| || || ||||| || ||||| ||||| ||||||||||| || || || Sbjct 30010 AAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGAC 30069 Query 101395 AATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT 101454 |||| | ||||||||| | ||| ||||| || |||| || || || || | ||| || Sbjct 30070 GTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTT 30129 Query 101455 TACAAATATCTGCATG 101470 ||||| ||||||||| Sbjct 30130 AACAAAAATCTGCATG 30145 >seq696 Length=56493 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||| || || |||||||||||||||||| || ||| | || Sbjct 4017 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 3958 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | || || || ||||| | ||||| ||||| | ||| |||||||| Sbjct 3957 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 3898 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 3897 AATCTGCAT 3889 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 101227 AATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTG 101286 |||||| || || ||||| || | | |||||||||||| ||||| ||||| || ||||| Sbjct 4176 AATATA-TATACCTTTCCACCACGAAGACGTAAAACTAAGTGAAGTGTAGACTCCTTTTG 4118 Query 101287 TATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 || || ||||| || | |||| |||| || | ||||||||| ||||| ||| Sbjct 4117 GATGTTATAATCAGCCAAGGTTCGTCCATCTTCAAGTTGCTTACCAGCAAAGATC 4063 >seq402 Length=77955 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||||||||| || ||||||||||| || || ||| |||| Sbjct 26394 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 26335 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||| || | || |||||||| || | || || ||||| ||||| || ||||| Sbjct 26334 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAA 26275 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 26274 AATCTGCAT 26266 >seq362 Length=81727 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| ||||| || ||||| || ||||| || |||||||| ||| ||| | || Sbjct 42455 CAGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTC 42514 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||| || || | ||||||||||||||||| ||||| || || |||||||| ||||| Sbjct 42515 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 42574 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 42575 AATTTGCAT 42583 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 |||||||||||| || ||||| || ||||| ||||| |||||||| || ||| |||| Sbjct 42728 CAAACGCTGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTC 42787 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | ||| ||||||||||||| || || || || || || ||||| || Sbjct 42788 AATCGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAA 42847 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 42848 GATCTGCAT 42856 >seq32 Length=201840 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||| || || |||||||||||||||||| || ||| | || Sbjct 46647 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 46706 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | || || || ||||| | ||||| ||||| | ||| |||||||| Sbjct 46707 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 46766 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 46767 AATCTGCAT 46775 >seq3649 Length=11525 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| ||||| || |||||||| || || ||||||||||| || ||| |||| Sbjct 8917 CAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTC 8858 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | || ||||||||||||| || || || || |||||||| ||||| Sbjct 8857 AATCGTGTCAGATGCCTCAACTTCAAGAGTGATAGTCTTACCAGTCAAAGTTTTGACAAA 8798 Query 101461 TATCTGCATGGTTACGCGAAGA 101482 || ||||| | | |||||| Sbjct 8797 GATTTGCATTCCTCCACGAAGA 8776 Score = 102 bits (112), Expect = 6e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| || || ||||| || ||||| || ||||||||||| || ||| |||| Sbjct 8101 CAAGCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTC 8042 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | ||| ||||||||||||| || || || || || |||||||| || Sbjct 8041 AATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAA 7982 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 7981 GATCTGCAT 7973 >seq8938 Length=3098 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||| || || ||||| || ||||| || ||||||||||| || ||| |||| Sbjct 1348 CAAACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTC 1289 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | ||| ||||||||||||| || || || || || || ||||| || Sbjct 1288 AATTGTATCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAA 1229 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 1228 GATCTGCAT 1220 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| ||||| || ||||| || || || || ||||| || ||| ||| | || Sbjct 1625 CAGACGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTC 1566 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||| || || | ||||||||||||||||| ||||| || || |||||||| ||||| Sbjct 1565 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1506 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 1505 AATTTGCAT 1497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| ||||| || |||||||| || || ||||||||||| || ||| |||| Sbjct 1896 CAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTC 1837 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | || ||||||||||| | || || || || | |||||| ||||| Sbjct 1836 AATCGTGTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAA 1777 Query 101461 TATCTGCATGGTTACGCGAAGA 101482 |||||||| | | |||||| Sbjct 1776 GATCTGCATTCCTCCACGAAGA 1755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396220004786487