Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2189 84.2 2e-11 seq402 84.2 2e-11 seq293 84.2 2e-11 >seq2189 Length=22760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 5987 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 5928 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 5927 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 5868 Query 48762 TGCATC 48767 |||||| Sbjct 5867 TGCATC 5862 >seq402 Length=77955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 26390 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 26331 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || || ||||| || || | |||||| || ||||| |||||||| || ||||||||| Sbjct 26330 GTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAAAATC 26271 Query 48762 TGCATC 48767 |||||| Sbjct 26270 TGCATC 26265 >seq293 Length=88462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 65921 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 65980 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 65981 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 66040 Query 48762 TGCATC 48767 |||||| Sbjct 66041 TGCATC 66046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380881465392393