Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq537 93.3 5e-14 seq3573 89.7 6e-13 seq10 84.2 3e-11 seq2790 82.4 9e-11 >seq537 Length=65186 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || ||| ||||||||| ||||||| Sbjct 21376 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTAGAGGTTGCTTTATCTCTTC 21317 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 21316 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 21268 >seq3573 Length=11888 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 1464 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 1523 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 1524 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 1572 >seq10 Length=266793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 28875 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 28816 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 28815 GAATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 28767 >seq2790 Length=16953 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 139295 AGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCT 139354 ||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 6237 AGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTCG 6178 Query 139355 AATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 6177 AATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 6130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578910891629320