Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8961 109 7e-19 seq2136 109 7e-19 seq2388 93.3 5e-14 seq481 82.4 9e-11 >seq8961 Length=3088 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 236 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 177 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | Sbjct 176 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCTCCT 117 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || || |||||||||||||||| || || || Sbjct 116 GAAGAAGTTTCTGTTTGCAATTTGGCTTCGATTGC 82 >seq2136 Length=23250 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 10429 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 10488 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | Sbjct 10489 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCTCCT 10548 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || || |||||||||||||||| || || || Sbjct 10549 GAAGAAGTTTCTGTTTGCAATTTGGCTTCGATTGC 10583 >seq2388 Length=20594 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| || |||||| | || || ||||||||||| | || |||||||| Sbjct 10683 GAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 10624 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | | Sbjct 10623 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 10567 Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| | ||||||| |||||||| || || || Sbjct 10566 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 10529 >seq481 Length=69973 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 || || |||||| | ||| ||||| || || || || | |||||| ||| | || Sbjct 27551 GGTGCTCTTCTCACTGGTCCACCAGGAACTGGCAAAACTTTACTCGCCAAAGCAACGGCA 27492 Query 175354 GGTGAATCAAATGTCCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || || | ||||| || |||||| | || | ||| | || | || | ||||||||||| Sbjct 27491 GGAGAGGCTAATGTACCTTTCATC-ACTGTTTCTGGCTCAGAATTCCTTGAGATGTTTGT 27433 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATG 175472 |||||| || || | | || | ||| | |||||||| || || | || ||| || Sbjct 27432 TGGTGTTGGCCCCGGACGTGTGAGGGATATGTTTGAAATGGCACGGAAGAAGTCACCTTG 27373 Query 175473 TATTGTCTTCATTGATGAGATTGATGC 175499 ||| | || ||||||||||| ||||| Sbjct 27372 CATTCTTTTTATTGATGAGATCGATGC 27346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596479435962080