Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq696 105 1e-17 seq32 105 1e-17 seq362 98.7 2e-15 seq8938 95.1 2e-14 seq1361 93.3 8e-14 seq5909 87.8 3e-12 seq1136 87.8 3e-12 >seq696 Length=56493 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 4011 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 3952 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 3951 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 3892 Query 193358 CATTTT 193363 ||| || Sbjct 3891 CATATT 3886 >seq32 Length=201840 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 46653 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 46712 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 46713 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 46772 Query 193358 CATTTT 193363 ||| || Sbjct 46773 CATATT 46778 >seq362 Length=81727 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || || || || || ||||| ||||| ||||||| ||| | ||| ||| || Sbjct 42193 CTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATCGT 42252 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||||||| ||||||||||| || ||||| | ||| || || || ||||| Sbjct 42253 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 42312 Query 193358 CATT 193361 |||| Sbjct 42313 CATT 42316 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| |||||||| || || || ||||| || || ||||| | ||| | ||| |||||| Sbjct 42461 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 42520 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || ||||| ||||| ||||||||||| || | ||||| ||||| ||||| Sbjct 42521 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 42580 Query 193358 CATT 193361 |||| Sbjct 42581 CATT 42584 >seq8938 Length=3098 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| || | ||| ||||| || || || || || || ||||| ||||||| || | | Sbjct 1901 AAAACCAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACA 1842 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| ||| || || || | ||||||||| ||||||||||| || || || || ||||| Sbjct 1841 TTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTG 1782 Query 193347 ACAAATATTTGCATT 193361 ||||| || |||||| Sbjct 1781 ACAAAGATCTGCATT 1767 Score = 89.7 bits (98), Expect = 9e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| |||||||| || || || || || || || || || | ||| | ||| |||||| Sbjct 1619 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 1560 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || ||||| ||||| ||||||||||| || | ||||| ||||| ||||| Sbjct 1559 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1500 Query 193358 CATT 193361 |||| Sbjct 1499 CATT 1496 >seq1361 Length=35035 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | |||| Sbjct 30288 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 30347 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| ||| ||||| ||||| || ||||| || || || || || || || Sbjct 30348 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 30407 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 30408 ATCTGCATATT 30418 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 30007 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 30066 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 30067 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 30126 Query 193343 TTTTACAAATATTTGCAT 193360 || ||||| || ||||| Sbjct 30127 CTTAACAAAAATCTGCAT 30144 >seq5909 Length=5756 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 4310 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 4369 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 4370 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 4429 Query 193343 TTTTACAAATATTTGCAT 193360 || || || || ||||| Sbjct 4430 CTTAACGAAAATCTGCAT 4447 >seq1136 Length=40351 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 26459 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 26518 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 26519 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 26578 Query 193343 TTTTACAAATATTTGCAT 193360 || || || || ||||| Sbjct 26579 CTTAACGAAAATCTGCAT 26596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899518428483120