Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq668 104 5e-17 seq293 102 2e-16 seq2189 98.7 2e-15 seq402 98.7 2e-15 seq362 98.7 2e-15 seq47 96.9 7e-15 seq8938 89.7 1e-12 >seq668 Length=57742 Score = 104 bits (114), Expect = 5e-17 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 38712 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 38653 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 38652 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 38593 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 38592 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTTTA 38535 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAA 50042 ||| | ||||| | ||||||||| |||||||| |||||| || Sbjct 38534 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 38490 >seq293 Length=88462 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 65400 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 65459 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 65460 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 65508 >seq2189 Length=22760 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 6511 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 6452 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||| ||||||||||||||||| Sbjct 6451 TATAATCAGCCAAAGTGCGTCCATCCTCCAACTGTTTACCAGCAAAGAT 6403 >seq402 Length=77955 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | ||| || | |||||||| | |||| ||| || ||||| Sbjct 27070 GTTCAATAATTCCACCACGAAGGCGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 27011 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 27010 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 26962 >seq362 Length=81727 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || || ||||| || || |||||| ||| ||||| |||| Sbjct 42461 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 42520 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | ||| || || Sbjct 42521 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 42580 Query 192534 CATT 192537 |||| Sbjct 42581 CATT 42584 >seq47 Length=171977 Score = 96.9 bits (106), Expect = 7e-15 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 || ||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 33732 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 33791 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| || Sbjct 33792 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 33851 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 33852 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 33909 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATA 50057 ||| | ||||| | ||||||||| |||||||| |||||| || | | |||| Sbjct 33910 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATA 33969 Query 50058 GCTTTAAATAA 50068 || |||||||| Sbjct 33970 GCATTAAATAA 33980 >seq8938 Length=3098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || || || || || || || ||| ||| ||||| |||| Sbjct 1619 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 1560 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | ||| || || Sbjct 1559 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1500 Query 192534 CATT 192537 |||| Sbjct 1499 CATT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984327488357850