Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq668 107 3e-18 seq47 100 5e-16 seq362 93.3 8e-14 seq8938 84.2 4e-11 >seq668 Length=57742 Score = 107 bits (118), Expect = 3e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 38714 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 38655 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 38654 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 38595 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 38594 AAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTT 38537 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344 ||| | ||||| | |||||||| |||||||| |||||| || Sbjct 38536 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 38490 >seq47 Length=171977 Score = 100 bits (110), Expect = 5e-16 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||| ||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 33730 AGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 33789 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| Sbjct 33790 GTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 33849 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 33850 AAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 33907 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357 ||| | ||||| | |||||||| |||||||| |||||| || | | || Sbjct 33908 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 33967 Query 39358 TAGCTTTAAATAA 39370 |||| |||||||| Sbjct 33968 TAGCATTAAATAA 33980 >seq362 Length=81727 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || |||||||| || || ||||| || || |||||| ||| ||||| ||||| Sbjct 42461 CTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACATTCTCAATAGT 42520 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | || || || Sbjct 42521 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 42580 Query 172067 CATT 172070 |||| Sbjct 42581 CATT 42584 >seq8938 Length=3098 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || |||||||| || || || || || || || ||| ||| ||||| ||||| Sbjct 1619 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 1560 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||| ||||| ||||| || ||||||||||| || ||||| | || || || Sbjct 1559 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1500 Query 172067 CATT 172070 |||| Sbjct 1499 CATT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904999200007800