Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05]
12,091 sequences; 183,531,997 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq693 87.8 5e-12
seq4509 86.0 2e-11
seq764 86.0 2e-11
seq323 86.0 2e-11
>seq693
Length=56625
Score = 87.8 bits (96), Expect = 5e-12
Identities = 133/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564
|| ||| | ||||||| ||| | ||||||| | | | ||||||| ||| |
Sbjct 13586 GGATAATAGAGAACATGTGCAAGCGTATCCATTCGAACGTGGAAATTTGTTGTATAAACG 13645
Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624
|| | ||| || |||||||||||||| |||||||| ||||| ||| ||||| | ||
Sbjct 13646 CCCATCGCTTGTTTTCCCATAGCACTTTGGTAAGTGTTTCTTGGACTTTGATTATGGTCA 13705
Query 252625 GGGAAAGGAATGCATGATGCTACAACACCGAAGAT-AGTGCTTGGGTGAATTTCACAGTG 252683
|| || || || ||| || |||||| || || | ||| |||||||||||||| ||
Sbjct 13706 GGAAATGGTATAATTGAAGCACAAACACCCAAAATCATTGC-CGGGTGAATTTCACAATG 13764
Query 252684 ACTGTAA 252690
| |||||
Sbjct 13765 AGTGTAA 13771
>seq4509
Length=8657
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | ||| |||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 8629 TTGCGGTAAATGCAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 8570
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | | |||| | ||||||
Sbjct 8569 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTGATTCTATGTCCCATCAT 8513
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||| ||
Sbjct 8512 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 8480
>seq764
Length=53643
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | ||| |||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 37235 TTGCGGTAAATGCAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 37176
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | | |||| | ||||||
Sbjct 37175 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTGATTCTATGTCCCATCAT 37119
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||| ||
Sbjct 37118 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 37086
>seq323
Length=85190
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 54310 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 54369
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | |||| | ||||||
Sbjct 54370 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 54426
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||| ||
Sbjct 54427 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 54459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471589591996667
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |