Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq6736 98.7 1e-15 seq2867 93.3 5e-14 seq943 89.7 7e-13 >seq6736 Length=4727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 116728 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTGAAAGAAGAACTTAAACATTTTCA 116787 ||||||||||| ||||| || | || |||| ||| ||||| |||||||||| Sbjct 1159 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 1218 Query 116788 AAATGTTACGACTTCTACTCAAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAA 116847 ||| | || || | ||| || || | ||||| ||||||||| | |||||| |||| Sbjct 1219 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 1278 Query 116848 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116901 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 1279 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 1332 >seq2867 Length=16413 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 116728 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTGAAAGAAGAACTTAAACATTTTCA 116787 ||||||||||| ||||| || | || |||| ||| ||||| |||||||||| Sbjct 2075 TGGAATTGGAAAGAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 2134 Query 116788 AAATGTTACGACTTCTACTCAAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAA 116847 ||| | || || | ||| || | | ||||| ||||||||| | |||||| |||| Sbjct 2135 TAATTTGACAACAACAACTAAAAACCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2194 Query 116848 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116901 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 2195 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2248 >seq943 Length=45879 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 116728 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTGAAAGAAGAACTTAAACATTTTCA 116787 ||||||||||| ||||| || | || |||| ||| ||||| |||||||||| Sbjct 419 TGGAATTGGAAAAAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 478 Query 116788 AAATGTTACGACTTCTACTCAAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAA 116847 ||| | || || | ||| || || | ||||| ||||||||| | |||||| |||| Sbjct 479 TAATTTGACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 538 Query 116848 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116901 | ||||| || ||||| | |||| | |||||||| ||||| ||||||| Sbjct 539 ATGTTGGGAAAGCATTCCCGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632394007103080