Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq499 89.7 5e-13 seq2189 86.0 6e-12 seq2136 86.0 6e-12 seq402 86.0 6e-12 seq293 86.0 6e-12 seq696 84.2 2e-11 seq32 84.2 2e-11 seq5909 82.4 7e-11 seq1361 82.4 7e-11 seq1136 82.4 7e-11 >seq499 Length=68593 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 138152 ATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTC 138211 |||||| || ||||| | ||||||| | ||||| || | || ||||||||||| Sbjct 9356 ATTTATTGACCGTAAATTGAATGGCATTTACAGCTGGCCGTGTACGCAAATAATACATTC 9415 Query 138212 CCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 | ||||| || ||||||||||| || | | || || || || | | || || || | Sbjct 9416 CTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGAGGTAATTTTTGCATATGTTG 9475 Query 138272 GTTTCGCCAGAAATATG----TTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCA 138327 | | ||| |||||| || || |||||||| || ||||| |||| |||||||| Sbjct 9476 GAT----CAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATAAAAGGAGCTCGATCA 9531 Query 138328 ATGGCCATGTTAATTAAATTTTTACTTT---TCATCTCCCACACGGTCTTGTATA 138379 | ||||| ||||| | ||| || || || ||||| || || ||||||| Sbjct 9532 ACTGCCATTTTAATGA---TTTCACGTTGTGGAATTTCCCAAACAGTTTTGTATA 9583 >seq2189 Length=22760 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || ||||||| || ||||||||||| ||||| || || | Sbjct 5862 GATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTC 5921 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 5922 TGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 5981 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 5982 ACAGCGTTTG 5991 >seq2136 Length=23250 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 138152 ATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTC 138211 |||||| || ||||| | ||||||| | ||||| || | || ||||||||||| Sbjct 13120 ATTTATTGACCGTAAATTGAATGGCATTGACAGCTGGCCGTGTACGCAAATAATACATTC 13061 Query 138212 CCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 ||||||| | ||||||||||| || | | || || || || | | || || || | Sbjct 13060 CCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAGGTAATTTTTGCATATGTTG 13001 Query 138272 GTTTCGCCAGAAATATG----TTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCA 138327 | | ||| |||||| || || |||||||| || ||||| |||| |||||||| Sbjct 13000 GAT----CAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATAAAAGGAGCTCGATCA 12945 Query 138328 ATGGCCATGTTAATTAAATTTTTACTTTT--CATCTCCCACACGGTCTTGTATA 138379 | ||||| || || ||||| || | || ||||| || || ||||||| Sbjct 12944 ACTGCCATTTTGAT--AATTTCACGTTGTGGAATTTCCCAAACAGTTTTGTATA 12893 >seq402 Length=77955 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || | ||||| || ||||||||||| ||||| || || | Sbjct 26265 GATGCAGATTTTTGTCAAGACTTTGACCGGAAAGACTATTACGCTTGAAGTTGAGGCATC 26324 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 26325 CGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 26384 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 26385 ACAGCGTTTG 26394 >seq293 Length=88462 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || ||||||| || ||||||||||| ||||| || || | Sbjct 66046 GATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTC 65987 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||| ||||| || || || || || || ||||| Sbjct 65986 TGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCA 65927 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 65926 ACAGCGTTTG 65917 >seq696 Length=56493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| ||||| || || || | Sbjct 3889 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 3948 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 3949 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 4007 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 4008 ACAGCGTTTG 4017 >seq32 Length=201840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| ||||| || || || | Sbjct 46775 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 46716 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 46715 GATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAGGGTATCCCGCCTGATCA 46657 Query 24823 ACAACGTTTG 24832 ||| |||||| Sbjct 46656 ACAGCGTTTG 46647 >seq5909 Length=5756 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| ||||| | Sbjct 4180 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCGTC 4121 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 4120 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 4061 Query 24823 ACAACGTTTG 24832 ||||| ||| Sbjct 4060 GCAACGATTG 4051 >seq1361 Length=35035 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| ||||| | Sbjct 29877 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCGTC 29818 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 29817 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 29758 Query 24823 ACAACGTTTG 24832 ||||| ||| Sbjct 29757 GCAACGATTG 29748 >seq1136 Length=40351 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| ||||| | Sbjct 26329 GATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACGATCACCCTAGAAGTGGAAGCGTC 26270 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 26269 TGATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCA 26210 Query 24823 ACAACGTTTG 24832 ||||| ||| Sbjct 26209 GCAACGATTG 26200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449829603601480