Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8938 109 4e-19 seq362 109 4e-19 seq3649 104 2e-17 seq1136 98.7 8e-16 seq5909 93.3 3e-14 seq1361 93.3 3e-14 seq2189 89.7 4e-13 seq293 89.7 4e-13 seq696 87.8 1e-12 seq32 87.8 1e-12 >seq8938 Length=3098 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 1889 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 1831 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||||||||| || ||||| | ||||| ||||| ||||| Sbjct 1830 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 1771 Query 29784 CATT 29787 |||| Sbjct 1770 CATT 1767 Score = 100 bits (110), Expect = 2e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | ||| Sbjct 1618 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 1560 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||||||||| |||||||| ||||| || ||||| ||||| || || Sbjct 1559 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 1500 Query 29784 CATT 29787 |||| Sbjct 1499 CATT 1496 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | || Sbjct 1341 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 1283 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 1282 ATCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 1223 Query 29784 CATTTT 29789 ||| || Sbjct 1222 CATATT 1217 >seq362 Length=81727 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||||||||| || |||||| | ||| ||| | || | ||| Sbjct 42462 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATTTTAGCTTTCACATTCTCAATAGT 42520 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||||||||| |||||||| ||||| || ||||| ||||| || || Sbjct 42521 ATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAAATTTG 42580 Query 29784 CATT 29787 |||| Sbjct 42581 CATT 42584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | || Sbjct 42194 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 42252 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || ||||| ||||||||||| ||||| || || || ||||| || || || Sbjct 42253 ATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 42312 Query 29784 CATT 29787 |||| Sbjct 42313 CATT 42316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 || || |||||||| ||||| || || || || |||||| | |||||| |||| | || Sbjct 42735 TGTTGGTCCGGCGGGATACCTTCCTTATCCTG-AATTTTGGCCTTGACATTTTCAATCGT 42793 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 42794 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 42853 Query 29784 CATTTT 29789 ||| || Sbjct 42854 CATATT 42859 >seq3649 Length=11525 Score = 104 bits (114), Expect = 2e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 8910 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 8852 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||| ||||| || ||||| || ||||| ||||| || || Sbjct 8851 GTCAGATGCCTCAACTTCAAGAGTGATAGTCTTACCAGTCAAAGTTTTGACAAAGATTTG 8792 Query 29784 CATT 29787 |||| Sbjct 8791 CATT 8788 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | || Sbjct 8094 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 8036 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || ||||| || || ||||| Sbjct 8035 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATCTG 7976 Query 29784 CATTTT 29789 ||| || Sbjct 7975 CATATT 7970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | ||| Sbjct 8371 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 8313 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||| ||||| ||||| || || || | || |||||||| || || Sbjct 8312 ATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTTG 8253 Query 29784 CATT 29787 |||| Sbjct 8252 CATT 8249 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || |||||||| |||||||||||||| |||||| | ||||| |||| | || Sbjct 8638 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATCGT 8580 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || || || ||||| ||||| ||||| || || || ||||| || || || Sbjct 8579 ATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 8520 Query 29784 CATT 29787 |||| Sbjct 8519 CATT 8516 >seq1136 Length=40351 Score = 98.7 bits (108), Expect = 8e-16 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| |||||||| || || |||||||| |||||||| || ||| ||| Sbjct 26739 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 26797 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 26798 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 26857 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 26858 AGATCTGCATATT 26870 >seq5909 Length=5756 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/133 (76%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| |||||||| || || ||||| | |||||||| || ||| ||| Sbjct 4589 CAATCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCCTTGAATTTTTGCCTTCACATTTT 4648 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 4649 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 4708 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 4709 AGATCTGCATATT 4721 >seq1361 Length=35035 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 30287 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 30345 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 30346 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 30405 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 30406 AGATCTGCATATT 30418 >seq2189 Length=22760 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 5984 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 5926 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 5925 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 5866 Query 29784 CAT 29786 ||| Sbjct 5865 CAT 5863 >seq293 Length=88462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 65924 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 65982 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 65983 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 66042 Query 29784 CAT 29786 ||| Sbjct 66043 CAT 66045 >seq696 Length=56493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 4010 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 3952 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 3951 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 3892 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 3891 CATATTTAA 3883 >seq32 Length=201840 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 46654 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 46712 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 46713 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 46772 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 46773 CATATTTAA 46781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385162434459831