Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq6736 84.2 3e-11 seq323 84.2 3e-11 >seq6736 Length=4727 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479 ||||||||||| ||||| || | || |||| |||| ||||| |||||||||| Sbjct 1159 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 1218 Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539 || | || || | || || || | ||||| || |||||| | |||||| | || Sbjct 1219 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 1278 Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 1279 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 1332 >seq323 Length=85190 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025 ||||||||| || | || | | | |||||||||||||||||||| ||||||||||||||| Sbjct 54381 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 54322 Query 52026 CATGTTCCTCAATC 52039 ||| | || ||||| Sbjct 54321 CATTTACCGCAATC 54308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635081600845480