Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq6736 107 3e-18 seq2867 102 1e-16 >seq6736 Length=4727 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046 ||| ||||||| |||||| | | || |||| ||||| ||||| |||||||||| Sbjct 1159 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 1218 Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106 | ||||||| || || || || ||||| ||||||||| | |||||| |||| Sbjct 1219 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 1278 Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160 | |||||| ||||||||||| |||| | |||||||| ||||| ||||||| Sbjct 1279 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 1332 >seq2867 Length=16413 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 121987 TGGTATTGGAATTAATAATCATCTTCCATGGAAATTACAAGAAGAACTTAAACATTTTCA 122046 ||| ||||||| |||||| | | ||||||| ||||| ||||| |||||||||| Sbjct 2075 TGGAATTGGAAAGAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 2134 Query 122047 AGAAGTAACAACTTGTACCCAAGATAAAACTaaaaaaaaTGCTGTTATTATGGGTCGAAA 122106 | | ||||| || || | || ||||| ||||||||| | |||||| |||| Sbjct 2135 TAATTTGACAACAACAACTAAAAACCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 2194 Query 122107 AACTTGGGATAGTATTCCTGATAAATTTAAACCATTAAAAAATCGAGTAAATAT 122160 | |||||| ||||||||||| |||| | |||||||| ||||| ||||||| Sbjct 2195 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 2248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655180962619000