Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq362 113 9e-20 seq8938 107 4e-18 seq5909 105 1e-17 seq1361 105 1e-17 seq1136 105 1e-17 seq2189 104 5e-17 seq402 104 5e-17 seq293 104 5e-17 seq3649 98.7 2e-15 seq696 95.1 2e-14 seq32 95.1 2e-14 >seq362 Length=81727 Score = 113 bits (124), Expect = 9e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||| || || || || ||||||||||| ||||| || || || |||||||||||||| Sbjct 42735 TGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTCAATCGTG 42794 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | ||| ||||| | ||| || ||||| || |||||||||||||| || |||||| Sbjct 42795 TCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTGC 42854 Query 82809 AT 82810 || Sbjct 42855 AT 42856 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || ||||| || || || || || |||||||| || ||||| || |||||||||||| Sbjct 42194 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATCGTA 42253 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || ||||| | |||||| |||||||||||||||||||| || || || ||| Sbjct 42254 TCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTGC 42313 Query 82809 ATT 82811 ||| Sbjct 42314 ATT 42316 >seq8938 Length=3098 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || || || || |||||||| |||||||| || || || ||||||||||| ||| Sbjct 1341 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGTA 1282 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | ||| ||||| | ||| || ||||| || |||||||||||||| || |||||| Sbjct 1281 TCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTGC 1222 Query 82809 AT 82810 || Sbjct 1221 AT 1220 Score = 100 bits (110), Expect = 6e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||| || || || ||||| |||||||| || || || |||||||||||||| Sbjct 1889 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 1830 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || ||||| | |||||| ||||| || |||| || || ||||| |||||| Sbjct 1829 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 1770 Query 82809 ATT 82811 ||| Sbjct 1769 ATT 1767 >seq5909 Length=5756 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||||||||| ||||||||||||||||||||||| || || || ||||| || || Sbjct 3785 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 3844 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || ||| ||||| | || || ||||| || ||||| || || || || || ||| Sbjct 3845 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 3904 Query 82809 ATT 82811 ||| Sbjct 3905 ATT 3907 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 || ||| ||||| ||||| ||||||||||||||||||||||| || || || ||||| || Sbjct 4322 TCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGAT 4381 Query 82745 CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 || ||| || ||| ||||| | || || ||||| || || | ||||| || || || Sbjct 4382 AGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAAAT 4441 Query 82805 CTGCAT 82810 |||||| Sbjct 4442 CTGCAT 4447 >seq1361 Length=35035 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||||||||| ||||||||||||||||||||||| || || || ||||| || || Sbjct 29482 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 29541 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || ||| ||||| | || || ||||| || ||||| || || || || || ||| Sbjct 29542 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 29601 Query 82809 ATT 82811 ||| Sbjct 29602 ATT 29604 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 || ||| ||||| ||||| ||||||||||||||||||||||| || || || ||||| || Sbjct 30019 TCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGAT 30078 Query 82745 CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 || ||| || ||| ||||| | || || ||||| || || | ||||| ||||| || Sbjct 30079 AGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAAAT 30138 Query 82805 CTGCAT 82810 |||||| Sbjct 30139 CTGCAT 30144 >seq1136 Length=40351 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||||||||| ||||||||||||||||||||||| || || || ||||| || || Sbjct 25934 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 25993 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || ||| ||||| | || || ||||| || ||||| || || || || || ||| Sbjct 25994 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 26053 Query 82809 ATT 82811 ||| Sbjct 26054 ATT 26056 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 || ||| ||||| ||||| ||||||||||||||||||||||| || || || ||||| || Sbjct 26471 TCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGAT 26530 Query 82745 CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 || ||| || ||| ||||| | || || ||||| || || | ||||| || || || Sbjct 26531 AGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAAAT 26590 Query 82805 CTGCAT 82810 |||||| Sbjct 26591 CTGCAT 26596 >seq2189 Length=22760 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || ||||||||||||||||| || || |||||||||||||| Sbjct 5984 TGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGTG 5925 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || ||||| | || || ||||| || || || ||||| ||||| |||||| Sbjct 5924 TCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTGC 5865 Query 82809 AT 82810 || Sbjct 5864 AT 5863 >seq402 Length=77955 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || ||||||||||||||||| || || |||||||||||||| Sbjct 26387 TGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGTG 26328 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || ||||| | || || ||||| || ||||| ||||| ||||| |||||| Sbjct 26327 TCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAAAATCTGC 26268 Query 82809 AT 82810 || Sbjct 26267 AT 26266 >seq293 Length=88462 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || ||||||||||||||||| || || |||||||||||||| Sbjct 65924 TGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGTG 65983 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || ||||| | || || ||||| || || || ||||| ||||| |||||| Sbjct 65984 TCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTGC 66043 Query 82809 AT 82810 || Sbjct 66044 AT 66045 >seq3649 Length=11525 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || || || || |||||||| |||||||| || || || ||||||||||| || Sbjct 8094 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGTG 8035 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | ||| ||||| | ||| || ||||| || |||||||| ||||| || |||||| Sbjct 8034 TCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATCTGC 7975 Query 82809 AT 82810 || Sbjct 7974 AT 7973 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||| || || || ||||| |||||||| || || || |||||||||||||| Sbjct 8910 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 8851 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || ||||| | ||| || ||||| || ||||| || || ||||| || ||| Sbjct 8850 TCAGATGCCTCAACTTCAAGAGTGATAGTCTTACCAGTCAAAGTTTTGACAAAGATTTGC 8791 Query 82809 ATT 82811 ||| Sbjct 8790 ATT 8788 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || ||||| || || || || || |||||||| || || || || |||||||||||| Sbjct 8638 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTA 8579 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || || || | ||| || |||||||||||||||||||| || || || ||| Sbjct 8578 TCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTGC 8519 Query 82809 ATT 82811 ||| Sbjct 8518 ATT 8516 >seq696 Length=56493 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || || ||||||||||| ||||| || ||||| ||||| ||| Sbjct 4010 TGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTA 3951 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || || || | ||| || || || || || | ||||||||||| |||||| Sbjct 3950 TCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTGC 3891 Query 82809 AT 82810 || Sbjct 3890 AT 3889 >seq32 Length=201840 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || || ||||||||||| ||||| || ||||| ||||| ||| Sbjct 46654 TGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTA 46713 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || || || | ||| || || || || || | ||||||||||| |||||| Sbjct 46714 TCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTGC 46773 Query 82809 AT 82810 || Sbjct 46774 AT 46775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981675099318849