Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4509 107 5e-18 seq764 107 5e-18 seq323 98.7 2e-15 seq1105 84.2 5e-11 >seq4509 Length=8657 Score = 107 bits (118), Expect = 5e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | ||||||| | Sbjct 8480 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATCAAAGTTCTT 8539 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 8540 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 8599 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| ||||| |||| ||||| Sbjct 8600 GGAGATGAAATGAATTTGCATTTACCGCAATC 8631 >seq764 Length=53643 Score = 107 bits (118), Expect = 5e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | ||||||| | Sbjct 37086 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATCAAAGTTCTT 37145 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 37146 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 37205 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| ||||| |||| ||||| Sbjct 37206 GGAGATGAAATGAATTTGCATTTACCGCAATC 37237 >seq323 Length=85190 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 54459 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 54400 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 54399 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 54340 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| | ||| |||| ||||| Sbjct 54339 GGAGATGAAATGAATTTACATTTACCGCAATC 54308 >seq1105 Length=41172 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 ||| |||| |||| |||| | |||||||||| || || || || ||||||||||| |||| Sbjct 23702 TGAAATTTAGATTTAATGAATGTGCTTGTACTCCATACAACGCTGATTTTGATGGCGATG 23761 Query 305463 AAATGAATATGCATGTACCTCAATCA 305488 |||||||| ||||| | || ||| || Sbjct 23762 AAATGAATGTGCATTTTCCACAAACA 23787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186628943782451