Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9361 96.9 8e-15 seq4192 96.9 8e-15 seq3181 96.9 8e-15 seq107 96.9 8e-15 seq95 96.9 8e-15 seq5909 86.0 1e-11 seq1361 86.0 1e-11 seq1136 86.0 1e-11 >seq9361 Length=2893 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 1763 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 1822 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || ||||| ||| | || Sbjct 1823 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 1882 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || |||||||| ||||| Sbjct 1883 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCCGACTACAA 1932 >seq4192 Length=9737 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 1166 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 1107 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 1106 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 1047 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 1046 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 997 >seq3181 Length=14077 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 6450 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 6391 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 6390 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 6331 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 6330 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 6281 >seq107 Length=131503 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 116212 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 116271 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || ||||| ||| | || Sbjct 116272 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 116331 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||||||||| ||||| | || ||||| || ||||| Sbjct 116332 ATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAA 116381 >seq95 Length=138503 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 6310 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 6251 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || ||||| ||| | || Sbjct 6250 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 6191 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || |||||||| ||||| Sbjct 6190 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCCGACTACAA 6141 >seq5909 Length=5756 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 4005 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 3946 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 3945 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 3914 >seq1361 Length=35035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 29702 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 29643 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 29642 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 29611 >seq1136 Length=40351 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 26154 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 26095 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 26094 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 26063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181637717122811