Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8961 143 4e-29 seq2388 138 2e-27 seq2136 138 2e-27 seq668 125 1e-23 seq499 105 9e-18 seq47 98.7 1e-15 >seq8961 Length=3088 Score = 143 bits (158), Expect = 4e-29 Identities = 206/288 (72%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||||||||||||||| || || | || || | |||| | ||| || ||||||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCG-AATTAAAAACTTGCAACATCGGAAT 2161 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 2162 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 2221 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 |||||| || || |||||||| ||| ||| || || ||||||||| || | ||| || Sbjct 2222 AATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTC 2281 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 2282 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 2341 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 2342 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 2389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 2799 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 2858 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || || ||| || Sbjct 2859 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 2917 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 2918 ACGATCATAAATAATTACTGAATTGAGTTT 2947 >seq2388 Length=20594 Score = 138 bits (152), Expect = 2e-27 Identities = 205/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||||||||||||||| || || | || || | |||| | ||| || ||| ||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAG-AATTAAAAACTTGCAACATTGGAAT 12497 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 12498 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 12557 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 ||| || || || |||||||| ||| ||| ||||| ||||||||| || | ||| || Sbjct 12558 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTC 12617 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 12618 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 12677 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 12678 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 12725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/278 (69%), Gaps = 13/278 (5%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || || || ||||| ||| | |||||||||| Sbjct 7894 TGTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGA 7953 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 7954 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 8013 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAAT---ACTCTTTTGAGGAATTTCCCAAAT 68579 |||| ||| ||| | |||||||| || || || | || ||||||||||||| Sbjct 8014 AAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGC---TGTGGAATTTCCCAAAC 8070 Query 68580 AGTCT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCA 68634 ||| | || ||| | ||||||||| ||||| | | ||||||| | || || Sbjct 8071 AGTTTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCT 8128 Query 68635 CCATCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 ||||| ||||| | |||||| || | |||| ||| Sbjct 8129 CCATCAGATATTAAACGATTCTTCATTTGGTCATCCCA 8166 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||| ||| |||| ||||| ||||||||| |||||||| |||||||||||| ||||| Sbjct 11076 ATAAAGCTGTTCAAATTCCTCTCCCCAACACTCATCCAAGTTAGGACATTCATTCGGACA 11135 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| || ||||| | |||||||| | ||||| |||||||| Sbjct 11136 CATTAAAGACCAAATGTCATCATCTCTCACTCGCTTCATAAA 11177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 13128 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 13187 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || || ||| || Sbjct 13188 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 13246 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 13247 ACGATCATAAATAATTACTGAATTGAGTTT 13276 >seq2136 Length=23250 Score = 138 bits (152), Expect = 2e-27 Identities = 205/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||||||||||||||| || || | || || | |||| | ||| || ||||||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGA-ATTAAAAACTTGCAACATCGGAAT 8620 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 8619 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 8560 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 ||| || || || |||||||| ||| ||| || || ||||||||| || | ||| || Sbjct 8559 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTC 8500 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 8499 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 8440 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 8439 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 8392 Score = 114 bits (126), Expect = 2e-20 Identities = 192/275 (70%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || ||||||||||| ||| | |||||||||| Sbjct 13080 TGTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGA 13021 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 13020 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 12961 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 |||| ||| ||| | |||||||| ||||| ||| ||||||||||||| ||| Sbjct 12960 AAAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGT 12901 Query 68583 CT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCACCA 68637 | || ||| | ||||||||| ||||| | | ||||||| | || || ||| Sbjct 12900 TTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCA 12843 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 || ||||| | |||||| || | |||| ||| Sbjct 12842 TCAGATATTAAACGATTCTTCATTTGGTCATCCCA 12808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 7986 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 7927 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || || ||| || Sbjct 7926 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 7868 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 7867 ACGATCATAAATAATTACTGAATTGAGTTT 7838 >seq668 Length=57742 Score = 125 bits (138), Expect = 1e-23 Identities = 286/435 (66%), Gaps = 44/435 (10%) Strand=Plus/Minus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||||| || | ||| || || || || | ||| || || ||||| | | ||||||| Sbjct 38726 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 38667 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| | ||| || || || |||||||| || |||||| Sbjct 38666 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 38607 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||| ||||| || || || ||||| ||||| |||| ||| | || || Sbjct 38606 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAAT 38547 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | |||||||||||||| ||||| | | || Sbjct 38546 GAAGCTTCT-TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 38488 Query 39835 CATTGTTTCTATAGCATTAAA---------------GAGATAATGTTTTTCATC------ 39873 | |||||||||||| | | ||| ||||| ||| Sbjct 38487 AAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAAGA 38428 Query 39874 -------AC----------TATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || |||||||| ||| ||||| ||||| |||||||||| Sbjct 38427 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 38368 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 ||||| || |||||||| || || |||||||| |||||||| | ||||| | ||||| Sbjct 38367 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGA 38308 Query 39977 ACCTC-TGAACAAAA 39990 || || ||| ||||| Sbjct 38307 ACTTCTTGAGCAAAA 38293 >seq499 Length=68593 Score = 105 bits (116), Expect = 9e-18 Identities = 190/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || ||||||| ||| ||| | |||||||||| Sbjct 9396 TGTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGA 9455 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 9456 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 9515 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 |||| ||| ||| | |||||||| || || ||| ||||||||||||| ||| Sbjct 9516 AAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGT 9575 Query 68583 CT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCACCA 68637 | || ||| | ||||||||| ||||| | | ||||||| | || || ||| Sbjct 9576 TTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCA 9633 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 || ||||| | |||||| || | |||| ||| Sbjct 9634 TCAGATATTAAACGATTCTTCATTTGGTCATCCCA 9668 >seq47 Length=171977 Score = 98.7 bits (108), Expect = 1e-15 Identities = 283/440 (64%), Gaps = 49/440 (11%) Strand=Plus/Plus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||| | || | || || || || || | ||| || || ||||||| | ||||||| Sbjct 33718 AAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 33777 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| ||| || || || |||||||| || |||||| Sbjct 33778 TCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 33837 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||| ||||| || || || || || ||||| |||| || | || || Sbjct 33838 AAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAAT 33897 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | |||||||||||||| ||||| | | || Sbjct 33898 GAAGCTTCT-TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 33956 Query 39835 CATTGTTTCTATAGCATTAAA-------GAGATA------------ATGTTTTTCA---- 39871 | | |||||||||||| || || || ||||| | Sbjct 33957 AAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAATTT 34016 Query 39872 -----------------TCACT---ATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||| | |||||||| ||| ||||| ||||| ||||| Sbjct 34017 AAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACA 34076 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||||||||| || |||||||| || || |||||||| |||||||| | || || | | Sbjct 34077 TTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTA 34136 Query 39972 TTTGTACCTC-TGAACAAAA 39990 |||| || || ||| ||||| Sbjct 34137 TTTGAACTTCTTGAGCAAAA 34156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686804982321240