Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq668 114 1e-20 seq47 111 1e-19 >seq668 Length=57742 Score = 114 bits (126), Expect = 1e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| |||||||||| || ||||||||||| ||||||||||| Sbjct 38291 CGTTTTGCTCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCT 38350 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 38351 ATTGAAAATATTCATTCAGAAATGTA 38376 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| ||| | || ||||| | || || || || ||||| || ||| Sbjct 38544 TTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 38603 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 38604 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 38663 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||||||| | ||| | ||||||||||| || Sbjct 38664 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 38711 >seq47 Length=171977 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||| Sbjct 34158 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 34099 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 34098 ATTGAAAATATTCATTCAGAAATGTA 34073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||| | || || || || ||||| || ||| Sbjct 33900 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAG 33841 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| |||| |||||||| |||| || Sbjct 33840 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAA 33781 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||| ||||| ||| |||||||| | ||| | ||||||||||| Sbjct 33780 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTG 33736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397397431256455