Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5909 87.8 2e-12 seq1361 87.8 2e-12 seq1136 87.8 2e-12 seq2388 82.4 6e-11 seq499 82.4 6e-11 >seq5909 Length=5756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 3779 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 3838 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 3839 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 3898 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 3899 ATTTGCAT 3906 >seq1361 Length=35035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 29476 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 29535 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 29536 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 29595 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 29596 ATTTGCAT 29603 >seq1136 Length=40351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 25928 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 25987 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 25988 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 26047 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 26048 ATTTGCAT 26055 >seq2388 Length=20594 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103 ||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| || || Sbjct 9316 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCCTG 9375 Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 || ||| | ||||||| ||| ||||||||||| || || | ||||| Sbjct 9376 GTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 9425 >seq499 Length=68593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103 ||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| ||||| Sbjct 10792 AGCTTCCAATGCGCCATAATAGATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCTTG 10851 Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 | ||| | ||||||| ||| ||||||||||| || || | ||||| Sbjct 10852 ATCGCTTACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 10901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424871782065192