Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq481 102 1e-16 seq554 89.7 6e-13 seq1291 87.8 2e-12 seq590 84.2 3e-11 >seq481 Length=69973 Score = 102 bits (112), Expect = 1e-16 Identities = 155/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 9695 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||||||| ||||| ||||||||||| || | ||||| ||| || | || || | Sbjct 27336 TTTCCCAATAGCATCGATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCAT 27395 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||||| | ||||| ||||| || ||| ||||||||||||||||| | || | || Sbjct 27396 TTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 27455 Query 9814 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | | |||| | |||||| || ||||||| || || || | ||| |||||| | || Sbjct 27456 GCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAG 27514 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | || || || ||||| ||| | ||| || ||||| Sbjct 27515 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 27551 >seq554 Length=64414 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 169328 GCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCA 169387 ||||| | ||||||| | ||| ||||||||||| || || || || ||||||||| Sbjct 673 GCATCTCTAACATTCAAAAGCTTTCCACGAAGAGGAAAAACCCCATAAAAATCACGACCG 614 Query 169388 ACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGC 169447 | || | ||| || || || | ||| || || || || || || || | |||||| Sbjct 613 ATAACTCCCAAACCAGCAACAGCCAAAGTTTTGGCTGAATCTCCTTCAGTTAGAATGAGC 554 Query 169448 GTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 |||||||| | ||| | || || || | ||||||||| |||||||||| || ||| Sbjct 553 GTACATTTACGAGAATTACGAGTTCCAGCTTCGTTCGCATCTTCCAATTTGGCAACACC 495 >seq1291 Length=36672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 9695 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||||||| ||||||||||||||||| || | ||||| ||| || | || || | Sbjct 27387 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 27328 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 ||| || | ||||| ||||| || ||| ||||||||||||||||| | || | || Sbjct 27327 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 27268 Query 9814 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | | |||| | ||| || || ||||| | || || ||| | ||| || || | || Sbjct 27267 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 27209 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | || || || ||||| ||| | ||| || ||||| Sbjct 27208 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 27172 >seq590 Length=61913 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 9748 |||| ||||| | ||||||||||||||||| || | ||||| ||| || | || Sbjct 37496 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGT 37437 Query 9749 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 || | ||| || | ||||| ||||| || ||| ||||||||||| || || | || Sbjct 37436 GCCATTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAAAAT-TCAAGGAAT 37378 Query 9809 TTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | || | | | |||| | ||| || || ||||| | || || ||| | ||| ||| || Sbjct 37377 TCTGAGCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTGGCAAG 37319 Query 9868 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | ||| || || || ||||| ||| | ||| || ||||| Sbjct 37318 CAAAGTTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 37277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583172647420840