Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq3352 86.0 3e-12 seq8663 82.4 4e-11 seq4492 82.4 4e-11 seq554 82.4 4e-11 >seq3352 Length=12992 Score = 86.0 bits (94), Expect = 3e-12 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 10877 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 10936 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 10937 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 10993 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 |||| ||| ||| ||||| |||||||| | ||| Sbjct 10994 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 11035 >seq8663 Length=3236 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 2973 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3032 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 3033 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3089 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 ||| ||| ||| ||||| |||||||| | ||| Sbjct 3090 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 3131 >seq4492 Length=8724 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 7755 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 7696 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 7695 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 7639 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 ||| ||| ||| ||||| |||||||| | ||| Sbjct 7638 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 7597 >seq554 Length=64414 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 2194 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 2135 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 2134 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 2078 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 ||| ||| ||| ||||| |||||||| | ||| Sbjct 2077 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 2036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235645270416150