Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8938 118 9e-22 seq3649 109 5e-19 seq402 109 5e-19 seq2189 105 6e-18 seq696 105 6e-18 seq362 105 6e-18 seq293 105 6e-18 seq32 105 6e-18 seq5909 91.5 1e-13 seq1361 91.5 1e-13 seq1136 87.8 2e-12 >seq8938 Length=3098 Score = 118 bits (130), Expect = 9e-22 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| || ||| |||| ||||||||||| || | || Sbjct 1768 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 1827 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 1828 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 1887 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 1888 CAGCGCTT 1895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || || |||| ||||||||||||||| | || Sbjct 1497 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1556 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || ||||| ||||| || || || ||||| ||||| Sbjct 1557 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 1616 Query 27108 CAGCGT 27113 |||||| Sbjct 1617 CAGCGT 1622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || |||| || ||| | || ||||||||||| ||| | || Sbjct 1220 ATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTCT 1279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||||| ||||| || || || || || Sbjct 1280 GATACAATTGAAAATGTTAAGGCCAAAATTCAAGACAAGGAAGGTATCCCGCCGGACCAG 1339 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 1340 CAGCGTTT 1347 >seq3649 Length=11525 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || ||| |||| ||||||||||| || | || Sbjct 8789 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACTATCACTCTTGAAGTTGAGGCATCT 8848 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 8849 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 8908 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 8909 CAGCGCTT 8916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| |||| || ||| | || ||||||||||| ||| | || Sbjct 7973 ATGCAGATCTTCGTAAAAACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTCT 8032 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| ||||| || || || || || Sbjct 8033 GACACAATTGAAAATGTTAAGGCCAAAATTCAAGACAAGGAAGGTATCCCGCCGGACCAG 8092 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 8093 CAGCGCTT 8100 >seq402 Length=77955 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||| ||| ||||||| |||||||| || | ||| Sbjct 26266 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAGACTATTACGCTTGAAGTTGAGGCATCC 26325 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || |||||||| || || ||||| || || |||||| Sbjct 26326 GACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCAA 26385 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 26386 CAGCGTTT 26393 >seq2189 Length=22760 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | ||||| ||| ||||||| |||||||| || |||| Sbjct 5863 ATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTCT 5922 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || |||||||| || || ||||| || || |||||| Sbjct 5923 GACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCAA 5982 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 5983 CAGCGTTT 5990 >seq696 Length=56493 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||||| ||||| || |||||||||| || || || | || Sbjct 3889 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 3948 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || |||||||||||| ||||| || || || || |||||| Sbjct 3949 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTGATCAA 4008 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 4009 CAGCGTTT 4016 >seq362 Length=81727 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || || |||| ||||||||||||||| | || Sbjct 42583 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 42524 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| |||||||| |||||||| || || ||||| ||||| Sbjct 42523 GATACTATTGAGAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 42464 Query 27108 CAGCGT 27113 |||||| Sbjct 42463 CAGCGT 42458 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || |||| || ||| | || ||||||||||| ||| | || Sbjct 42856 ATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTCT 42797 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| |||||||| || || ||||| || || || || ||| Sbjct 42796 GACACGATTGAAAATGTCAAGGCCAAAATTCAGGATAAGGAAGGTATCCCGCCGGACCAA 42737 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 42736 CAGCGTTT 42729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| |||| ||||| ||||| || | || Sbjct 42315 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATAACTCTCGAAGTTGAGGCATCG 42256 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | |||||| ||||||||||||||||| || || ||||| || || Sbjct 42255 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 42196 Query 27108 CAGCGT 27113 |||||| Sbjct 42195 CAGCGT 42190 >seq293 Length=88462 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | ||||| ||| ||||||| |||||||| || |||| Sbjct 66045 ATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGCGTCT 65986 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || |||||||| || || ||||| || || |||||| Sbjct 65985 GACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCAA 65926 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 65925 CAGCGTTT 65918 >seq32 Length=201840 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||||| ||||| || |||||||||| || || || | || Sbjct 46775 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 46716 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || |||||||||||| ||||| || || || || |||||| Sbjct 46715 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTGATCAA 46656 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 46655 CAGCGTTT 46648 >seq5909 Length=5756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || ||||| ||||||||| |||| Sbjct 4179 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCGTCT 4120 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || ||||| ||||||||||| || || || ||||| Sbjct 4119 GATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 4060 Query 27108 CAGCGTTT 27115 || || || Sbjct 4059 CAACGATT 4052 >seq1361 Length=35035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || ||||| ||||||||| |||| Sbjct 29876 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACAATCACTCTAGAAGTGGAAGCGTCT 29817 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || ||||| ||||||||||| || || || ||||| Sbjct 29816 GATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 29757 Query 27108 CAGCGTTT 27115 || || || Sbjct 29756 CAACGATT 29749 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || || | || ||||||||||| || | || Sbjct 30415 ATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCTTCT 30356 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||||||||| |||||||| || || ||||| Sbjct 30355 GATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 30296 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 30295 CAGCGATT 30288 >seq1136 Length=40351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || ||||||||| |||| Sbjct 26328 ATGCAGATCTTTGTGAAGACCCTCACGGGAAAGACGATCACCCTAGAAGTGGAAGCGTCT 26269 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || ||||| ||||||||||| || || || ||||| Sbjct 26268 GATACCATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 26209 Query 27108 CAGCGTTT 27115 || || || Sbjct 26208 CAACGATT 26201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || | || ||||||||||| || | || Sbjct 26867 ATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCTTCT 26808 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||||||||| |||||||| || || ||||| Sbjct 26807 GATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCGCCTGATCAG 26748 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 26747 CAGCGATT 26740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434852667520320