Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq74 109 4e-19 seq10130 104 2e-17 seq583 104 2e-17 >seq74 Length=149414 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||||||||| |||| ||||||||| Sbjct 17033 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGTGCATCACCAAGTGTATGAAT 17092 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 17093 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 17152 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 17153 GGCTATATTGAAAGGAACGCCTAAA 17177 >seq10130 Length=2554 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||| ||||| |||| ||||||||| Sbjct 1253 TTGTGTTTTTAAAGCCTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 1194 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 1193 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 1134 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 1133 GGCTATATTGAAAGGAACGCCTAAA 1109 >seq583 Length=62644 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||| ||||| |||| ||||||||| Sbjct 48144 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 48203 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 48204 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGGGTTAGTAATGAATAACT 48263 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 48264 GGCTATATTGAAAGGAACGCCTAAA 48288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408538189322837