Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq696 98.7 7e-16 seq32 98.7 7e-16 seq362 84.2 1e-11 >seq696 Length=56493 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 3883 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 3942 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 3943 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 4001 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 4002 TGATCAACAGCGTTT 4016 >seq32 Length=201840 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 46781 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 46722 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| |||||| || || ||||| ||| | ||||| Sbjct 46721 GCTTCTGATACCATTGAGAATGTTAAGGCAAAAA-TTCAAGATAAAGAGGGTATCCCGCC 46663 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 46662 TGATCAACAGCGTTT 46648 >seq362 Length=81727 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || | || ||||| || |||||||| |||||||| || Sbjct 42859 AATATGCAGATCTTCGTAAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCC 42800 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || |||||| || || |||||| | ||||| || Sbjct 42799 TCTGACACGATTGAAAATGTCAAGGCCAAAATTCAGGATAAGGAAGGTATCCCGCCGGAC 42740 Query 23728 CAACAGCGTTT 23738 ||||||||||| Sbjct 42739 CAACAGCGTTT 42729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337959791222228