Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9361 122 2e-22 seq4192 122 2e-22 seq3181 122 2e-22 seq107 122 2e-22 seq95 122 2e-22 seq3649 96.9 8e-15 seq5909 89.7 1e-12 seq1361 89.7 1e-12 seq1136 89.7 1e-12 seq8938 87.8 4e-12 seq362 87.8 4e-12 seq55 87.8 4e-12 seq2648 84.2 5e-11 >seq9361 Length=2893 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| |||||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 1933 ATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 1874 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 1873 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 1814 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 1813 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 1754 >seq4192 Length=9737 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 996 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 1055 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 1056 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 1115 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 1116 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 1175 >seq3181 Length=14077 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 6280 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 6339 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 6340 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 6399 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 6400 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 6459 >seq107 Length=131503 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | ||||||||| |||||||| || ||||| Sbjct 116382 ATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTG 116323 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 116322 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 116263 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 116262 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 116203 >seq95 Length=138503 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| |||||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 6140 ATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 6199 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 6200 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 6259 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 6260 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 6319 >seq3649 Length=11525 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| || Sbjct 8097 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 8038 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| ||||||| ||| | Sbjct 8037 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATC 7978 Query 225709 TGCATTTT 225716 ||||| || Sbjct 7977 TGCATATT 7970 >seq5909 Length=5756 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 3779 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 3838 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 3839 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 3898 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 3899 ATTTGCATT 3907 >seq1361 Length=35035 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 29476 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 29535 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 29536 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 29595 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 29596 ATTTGCATT 29604 >seq1136 Length=40351 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 25928 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 25987 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 25988 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 26047 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 26048 ATTTGCATT 26056 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225588 TCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT 225647 ||| || || || |||||||| |||||||||||||| || ||| ||||||| |||||| Sbjct 26742 TCGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGAT 26801 Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707 ||| || || | || || || | |||||||| || || || | ||| |||| ||| | Sbjct 26802 GGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGAT 26861 Query 225708 TTGCATTTT 225716 ||||| || Sbjct 26862 CTGCATATT 26870 >seq8938 Length=3098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| || Sbjct 1344 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 1285 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 || || |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 1284 GTATCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 1225 Query 225709 TGCATTTT 225716 ||||| || Sbjct 1224 TGCATATT 1217 >seq362 Length=81727 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || |||||||| ||||| ||||||||||| || || || || ||| ||| ||| || Sbjct 42732 CGCTGTTGGTCCGGCGGGATACCTTCCTTATCCTGAATTTTGGCCTTGACATTTTCAATC 42791 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 42792 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 42851 Query 225709 TGCATTTT 225716 ||||| || Sbjct 42852 TGCATATT 42859 >seq55 Length=164770 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 150131 AAGATTTGTCCATCGGTAATTGAAATAACGTTTGTTGGAATATAAGCAGAAACGTCACCA 150072 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 ||||| || || | || || || ||||| || ||||| || Sbjct 150071 GCTTGAGTCTCAATAATTGGCAAAGCTGTAAGAGATCCTCC 150031 >seq2648 Length=18052 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| ||||| || || || ||||| || ||||||||||| || ||||| Sbjct 4939 AAGATTTGTCCATCGGTAATTGAAATGACGTTTGTTGGAATATAAGCAGACACGTCACCA 4880 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 ||||| || || | || ||||| ||||| || ||||| || Sbjct 4879 GCTTGGGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 4839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192346457911154